Factsheet for Zm00001d035724_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008638_P001	Maize	cytosol	8.98	69.51
Zm00001d023690_P001	Maize	cytosol	14.33	69.47
Zm00001d027690_P001	Maize	cytosol	8.35	68.83
Zm00001d000095_P001	Maize	cytosol	15.91	61.59
Zm00001d000157_P001	Maize	cytosol	9.61	58.1
Zm00001d031086_P001	Maize	plastid	48.19	53.78
Zm00001d041319_P001	Maize	plastid	45.98	48.34
CDX82482	Canola	cytosol	28.66	45.96
Bra001552.1-P	Field mustard	cytosol	28.5	45.71
CDX98457	Canola	plastid	22.52	45.4
Zm00001d033222_P001	Maize	extracellular	43.15	45.36
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	35.91	45.06
CDY57471	Canola	cytosol	28.03	44.95
Zm00001d013689_P001	Maize	plastid	42.52	44.93
Bra012603.1-P	Field mustard	cytosol	31.02	44.57
GSMUA_Achr4P22870_001	Banana	plastid	41.26	43.59
HORVU5Hr1G008050.1	Barley	plastid	41.57	43.49
TraesCS5B01G029300.1	Wheat	plastid	42.05	43.49
TraesCS5D01G038800.1	Wheat	plastid	42.05	43.41
GSMUA_Achr7P01250_001	Banana	plastid	40.47	42.62
GSMUA_Achr2P12950_001	Banana	plastid	39.53	42.61
CDY39117	Canola	mitochondrion	37.01	42.5
Zm00001d018819_P001	Maize	plastid	37.8	41.88
GSMUA_Achr4P31460_001	Banana	plastid	39.69	41.79
Zm00001d007876_P001	Maize	plastid	37.64	41.57
GSMUA_Achr5P02570_001	Banana	plastid	39.84	41.48
GSMUA_Achr6P31180_001	Banana	plastid	38.9	40.96
PGSC0003DMT400039054	Potato	plastid	37.32	40.86
CDY33218	Canola	plastid	38.43	40.8
AT3G14440.1	Thale cress	plastid	38.43	40.73
Bra021558.1-P	Field mustard	plastid	38.27	40.64
Bra027336.1-P	Field mustard	plastid	38.11	40.54
CDX97576	Canola	plastid	38.11	40.54
CDX98455	Canola	plastid	38.11	40.54
Solyc08g016720.1.1	Tomato	plastid	36.85	40.28
CDX88443	Canola	plastid	37.95	40.03
Solyc07g056570.1.1	Tomato	plastid	38.11	40.0
VIT_10s0003g03750.t01	Wine grape	plastid	38.11	40.0
CDY52448	Canola	plastid	37.8	39.87
Bra008358.1-P	Field mustard	plastid	36.85	39.86
Bra013298.1-P	Field mustard	plastid	36.38	39.76
CDX99475	Canola	plastid	36.38	39.76
CDX78842	Canola	plastid	36.38	39.76
VIT_19s0093g00550.t01	Wine grape	plastid	38.11	39.74
Bra035033.1-P	Field mustard	plastid	37.64	39.7
CDY55629	Canola	cytosol, plastid	36.38	39.62
CDY01534	Canola	cytosol, plastid	36.22	39.45
AT4G18350.1	Thale cress	cytosol, plastid	36.22	39.45
Bra032359.1-P	Field mustard	plastid	36.22	39.12
CDY26294	Canola	plastid	36.22	39.05
CDY61838	Canola	plastid	36.06	38.88
AT1G30100.1	Thale cress	plastid	35.75	38.54
Os12t0617400-01	Rice	cytosol	16.69	37.46
AT1G78390.1	Thale cress	cytosol, plastid	37.48	36.23
Zm00001d019813_P001	Maize	plastid	9.92	33.33
CDX98456	Canola	cytosol	13.07	32.55
KRH45171	Soybean	plastid	7.56	29.09
Zm00001d009286_P001	Maize	plastid	10.87	27.38
Zm00001d042076_P001	Maize	cytosol, plastid	17.64	26.67
Zm00001d033377_P001	Maize	plastid	11.5	25.7
Zm00001d051556_P001	Maize	plastid	25.51	25.39
Zm00001d017766_P001	Maize	plastid	25.51	25.35
Zm00001d048373_P002	Maize	cytosol, plasma membrane	20.79	24.0
Zm00001d022623_P001	Maize	cytosol	13.54	23.06
Zm00001d034075_P001	Maize	cytosol	1.1	19.44
Zm00001d020069_P002	Maize	plastid	16.69	18.96
Zm00001d023458_P001	Maize	cytosol	3.94	17.73
Zm00001d027592_P001	Maize	mitochondrion	10.71	15.96
Zm00001d045232_P001	Maize	plastid	15.12	15.66

Protein Annotations

Gene3D:1.10.287.660	MapMan:50.1.12	UniProt:A0A1D6LI49	ProteinID:AQK79536.1	InterPro:Carotenoid_Oase	ncoils:Coil
GO:GO:0000350	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:Helix_hairpin_bin_sf	InterPro:IPR029012	InterPro:Isy1	InterPro:Isy1_sf	PFAM:PF03055
PFAM:PF06246	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	SUPFAM:SSF140102	UniParc:UPI0008433116	EnsemblPlantsGene:Zm00001d035724
EnsemblPlants:Zm00001d035724_P001	EnsemblPlants:Zm00001d035724_T001	SEG:seg	:	:	:

Description

9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic

Coordinates

chr6:-:43483863..43487030

Molecular Weight (calculated)

70326.3 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.326

Length

635 amino acids

Sequence
(BLAST)

001: MPPATARPTH PAAQPLLPQR PPHARLFTAH PADLRYRNAH PCTPAAAAKS KCRLPLPASS ARTSRLPCLL SANAPRPPRE PPRKPRERRP YLASECRDLA
101: DAERWRSEIL REIGAKVAEI QNEGLGEHRL RDLNDEINKL LRERGHWERR IVELSGRDYS RSSNAPLITD LDSNIVDVPN PSGLLERPRA LPRSTDPAVQ
201: IAGNFASVGK KAPVRSLPVS GCIPPFISGV YERNGANPCF EPSAGHHLFD GDRMVHAERA LGRAVFPKAI GELHRHSGIA RLVLFYTRGL CGLVDPSRST
301: GDANPGLVYF NGHLLAMSKD DLPYQVCVTA DDDLRTVGRY DFGGQLAGCG SMIAHPKLDP ASGELFALSY DVIKRPYLRP DGGKSGDVEI PLEQPTMVHD
401: FAITERFVVV PDHQVVFKLG EILQGGSPVV MDAGKTSRFG VLPKYERDAS EMAWVDVSDC FSFHLWNAWE DADTREVVVV RSCVTDGNLQ HEYSGNDCLQ
501: LKGHQTYTEV SSLLEHLKLC MFFSKKSFSA FLKFGGYKQE DILIHKARLM QPSFALVCDK RTKCLLLFIR GAISTKERLT AATSAEVPFH HIILSEGKIS
601: NVVLGKLQSD VLKDAISQIV QDAKKNRKFT ETVEL

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.