Factsheet for Bra032359.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002106.1-P
Bra006420.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Bra002106.1-P	AT5G17790.1	15340011
AT1G30100.1	Bra006420.1-P	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26294	Canola	plastid	98.98	98.81
AT1G30100.1	Thale cress	plastid	93.2	93.04
Zm00001d008638_P001	Maize	cytosol	10.54	75.61
Bra012603.1-P	Field mustard	cytosol	56.8	75.57
Zm00001d027690_P001	Maize	cytosol	9.86	75.32
Bra001552.1-P	Field mustard	cytosol	50.17	74.49
Zm00001d023690_P001	Maize	cytosol	15.48	69.47
PGSC0003DMT400039054	Potato	plastid	68.37	69.31
Solyc08g016720.1.1	Tomato	plastid	68.2	69.02
VIT_10s0003g03750.t01	Wine grape	plastid	69.9	67.93
Bra013298.1-P	Field mustard	plastid	65.48	66.27
Os12t0617400-01	Rice	cytosol	31.8	66.08
Bra027336.1-P	Field mustard	plastid	67.01	66.0
Bra021558.1-P	Field mustard	plastid	66.84	65.72
KRH58642	Soybean	plastid	64.46	64.46
Bra008358.1-P	Field mustard	plastid	64.12	64.22
Bra035033.1-P	Field mustard	plastid	65.48	63.95
GSMUA_Achr4P22870_001	Banana	plastid	63.78	62.4
Zm00001d031086_P001	Maize	plastid	60.03	62.04
KRH42549	Soybean	plastid	62.07	61.97
GSMUA_Achr4P31460_001	Banana	plastid	62.93	61.36
GSMUA_Achr6P31180_001	Banana	plastid	62.93	61.36
GSMUA_Achr2P12950_001	Banana	plastid	61.05	60.95
TraesCS5A01G374000.1	Wheat	plastid	60.88	60.58
TraesCS5D01G383500.1	Wheat	plastid	61.22	60.5
GSMUA_Achr5P02570_001	Banana	plastid	62.76	60.49
TraesCS5B01G375900.1	Wheat	plastid	61.05	60.34
GSMUA_Achr7P01250_001	Banana	plastid	61.73	60.2
Os03t0645900-00	Rice	plastid	61.9	59.87
Zm00001d033222_P001	Maize	extracellular	61.05	59.44
HORVU5Hr1G008050.1	Barley	plastid	61.22	59.31
Zm00001d018819_P001	Maize	plastid	57.48	58.99
OQU88453	Sorghum	plastid	57.48	58.99
TraesCS5D01G038800.1	Wheat	plastid	61.56	58.86
TraesCS5B01G029300.1	Wheat	plastid	61.39	58.79
Zm00001d013689_P001	Maize	plastid	60.03	58.74
Zm00001d041319_P001	Maize	plastid	60.2	58.61
EER93751	Sorghum	plastid	60.88	58.59
Zm00001d007876_P001	Maize	plastid	56.97	58.26
Zm00001d000095_P001	Maize	cytosol	16.16	57.93
TraesCS2D01G251600.1	Wheat	plastid	57.14	57.73
HORVU5Hr1G054970.1	Barley	cytosol	59.52	57.57
Os07t0154100-01	Rice	plastid	56.29	56.87
TraesCS2B01G268400.1	Wheat	plastid	56.97	56.21
TraesCS2A01G250600.1	Wheat	plastid	56.12	55.65
HORVU5Hr1G092850.2	Barley	plastid	60.88	55.59
HORVU5Hr1G044510.1	Barley	cytosol	56.63	55.5
Zm00001d000157_P001	Maize	cytosol	9.52	53.33
Zm00001d023458_P001	Maize	cytosol	12.76	53.19
Bra015002.1-P	Field mustard	plastid	51.7	51.97
Zm00001d042076_P001	Maize	cytosol, plastid	32.65	45.71
Zm00001d022623_P001	Maize	cytosol	26.36	41.55
Bra013378.1-P	Field mustard	peroxisome	34.18	39.88
Zm00001d035724_P001	Maize	plastid	39.12	36.22
Bra020970.1-P	Field mustard	plastid	34.69	35.98
Zm00001d019813_P001	Maize	plastid	10.54	32.8
Bra040449.1-P	Field mustard	cytosol	30.44	32.72
Bra007826.1-P	Field mustard	plastid	31.29	30.72
Bra007825.1-P	Field mustard	plastid	27.72	28.35
Zm00001d027592_P001	Maize	mitochondrion	19.56	27.0
Zm00001d009286_P001	Maize	plastid	11.56	26.98
Zm00001d033377_P001	Maize	plastid	11.9	24.65

Protein Annotations

MapMan:11.1.1.4	EnsemblPlantsGene:Bra032359	EnsemblPlants:Bra032359.1	EnsemblPlants:Bra032359.1-P	InterPro:Carotenoid_Oase	GO:GO:0000003
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006629	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009414	GO:GO:0009579	GO:GO:0009628	GO:GO:0009688	GO:GO:0009791	GO:GO:0009987
GO:GO:0010162	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	UniProt:M4EU77	PFAM:PF03055
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	UniParc:UPI00025425CC	SEG:seg	:	:

Description

AT1G30100 (E=4e-311) NCED5, ATNCED5 | NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA09:-:22208165..22209931

Molecular Weight (calculated)

65280.3 Da

IEP (calculated)

5.387

GRAVY (calculated)

-0.315

Length

588 amino acids

Sequence
(BLAST)

001: MASSYIISPN TAKLNLSFAP SDLDAPSPSS SVSYTNTKSR RRKFSTNSVT DSPALLFPNY PSPKPIILEK DTSHWNPLQR AASAAFDFAE AALLSRERSQ
101: PLPKTVDPRH QISGNYAPVP EQSVKSSLSV TGKIPDCIDG VYLRNGANPL FEPVSGHHLF DGDGMVHAVK ITNGDASYSC RFTETERLVQ EKRLGSPIFP
201: KAIGELHGHT GIARLMLFYA RGLFGLLNHR NGTGVANAGL VYFHDRLLAM SEDDLPYQVR VTDDGDLETV GRFDFDGQLN SAMIAHPKID PETKELFALS
301: YDVVKKPYLK YFRFSPEGEK SPDVEIPLAS PTMMHDFAIT ENFVVIPDQQ VVFKLADMFL GKSPVKYDGE KVSRFGILPK NAEDASEMIW VESPDTFCFH
401: LWNAWESPET DEVVVIGSCM TPADSIFNEC DEQLNSVLSE IRLNLKTGKS TRRTIIPGSV QMNLEAGMVN RNFLGRKTRY AYLAIAEPWP KVSGFAKVDL
501: STGEVKNHFY GDKKYGGEPF FLPRGLESDG EDDGYIMSFV HDEEGWKSEL QIVNAVTLEL EATIKLPSRV PYGFHGTFVN SADMLNQA

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.