Factsheet for Bra027336.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97576	Canola	plastid	98.33	98.33
Bra001552.1-P	Field mustard	cytosol	61.47	92.68
Bra021558.1-P	Field mustard	plastid	92.8	92.64
AT3G14440.1	Thale cress	plastid	90.95	90.65
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	66.0	77.87
Bra012603.1-P	Field mustard	cytosol	53.1	71.72
VIT_19s0093g00550.t01	Wine grape	plastid	71.69	70.28
Zm00001d027690_P001	Maize	cytosol	9.05	70.13
Zm00001d008638_P001	Maize	cytosol	9.55	69.51
Zm00001d023690_P001	Maize	cytosol	15.24	69.47
Solyc07g056570.1.1	Tomato	plastid	70.18	69.26
Os12t0617400-01	Rice	cytosol	32.33	68.2
Bra032359.1-P	Field mustard	plastid	66.0	67.01
Bra035033.1-P	Field mustard	plastid	66.83	66.28
Bra008358.1-P	Field mustard	plastid	64.49	65.59
Bra013298.1-P	Field mustard	plastid	62.98	64.72
GSMUA_Achr6P31180_001	Banana	plastid	65.16	64.51
GSMUA_Achr4P22870_001	Banana	plastid	64.49	64.06
GSMUA_Achr2P12950_001	Banana	plastid	62.65	63.5
GSMUA_Achr5P02570_001	Banana	plastid	64.66	63.28
TraesCS5D01G383500.1	Wheat	plastid	62.98	63.19
TraesCS5B01G375900.1	Wheat	plastid	62.98	63.19
KRH43866	Soybean	plastid	48.58	63.18
TraesCS5A01G374000.1	Wheat	plastid	62.48	63.11
Os03t0645900-00	Rice	plastid	64.15	62.99
GSMUA_Achr7P01250_001	Banana	plastid	63.48	62.85
HORVU5Hr1G008050.1	Barley	plastid	63.65	62.6
Zm00001d033222_P001	Maize	extracellular	63.15	62.42
Zm00001d031086_P001	Maize	plastid	59.46	62.39
TraesCS5B01G029300.1	Wheat	plastid	64.15	62.38
GSMUA_Achr4P31460_001	Banana	plastid	62.81	62.19
TraesCS5D01G038800.1	Wheat	plastid	63.82	61.95
Zm00001d013689_P001	Maize	plastid	62.31	61.9
EER93751	Sorghum	plastid	63.32	61.87
Zm00001d018819_P001	Maize	plastid	58.79	61.26
OQU88453	Sorghum	plastid	58.63	61.08
Zm00001d007876_P001	Maize	plastid	58.46	60.7
HORVU5Hr1G054970.1	Barley	cytosol	61.14	60.03
Os07t0154100-01	Rice	plastid	58.29	59.79
TraesCS2D01G251600.1	Wheat	plastid	58.29	59.79
Zm00001d041319_P001	Maize	plastid	60.13	59.44
HORVU5Hr1G092850.2	Barley	plastid	63.48	58.85
HORVU5Hr1G044510.1	Barley	cytosol	58.96	58.67
TraesCS2B01G268400.1	Wheat	plastid	58.46	58.56
Zm00001d000095_P001	Maize	cytosol	15.91	57.93
TraesCS2A01G250600.1	Wheat	plastid	57.29	57.67
Zm00001d000157_P001	Maize	cytosol	9.72	55.24
Bra015002.1-P	Field mustard	plastid	52.93	54.02
Zm00001d023458_P001	Maize	cytosol	11.73	49.65
KRH13600	Soybean	plastid	47.57	49.39
Zm00001d042076_P001	Maize	cytosol, plastid	33.84	48.1
Zm00001d022623_P001	Maize	cytosol	27.3	43.7
Bra013378.1-P	Field mustard	peroxisome	32.5	38.49
Zm00001d035724_P001	Maize	plastid	40.54	38.11
Zm00001d019813_P001	Maize	plastid	11.39	35.98
Bra020970.1-P	Field mustard	plastid	32.5	34.22
Bra040449.1-P	Field mustard	cytosol	29.48	32.18
Bra007826.1-P	Field mustard	plastid	30.15	30.05
Zm00001d009286_P001	Maize	plastid	12.56	29.76
Bra007825.1-P	Field mustard	plastid	26.3	27.3
Zm00001d033377_P001	Maize	plastid	12.9	27.11
Zm00001d027592_P001	Maize	mitochondrion	18.93	26.53

Protein Annotations

EMBL:AY646239	EnsemblPlants:Bra027336.1	EnsemblPlants:Bra027336.1-P	EnsemblPlantsGene:Bra027336	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	ProteinID:AAV35466
ProteinID:AAV35466.1	SEG:seg	UniParc:UPI0002547CE7	UniProt:M4EEX4	MapMan:11.1.1.4	:

Description

AT3G14440 (E=3e-314) NCED3, ATNCED3, STO1, SIS7 | NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA05:+:20396035..20397828

Molecular Weight (calculated)

65764.0 Da

IEP (calculated)

6.178

GRAVY (calculated)

-0.287

Length

597 amino acids

Sequence
(BLAST)

001: MTSFTATTAV SRRLVGGNHT KPPLSSSQSS ALSYSCSVPM TNRSQRKLNV SSALHTHPAL HFPKQSSTSP AIIVNPKTKE SDTKQMNLFQ RAAAAALDAA
101: EGFLVSHERQ HPLPKTADPS VQIAGNFAPV NEQPLRRNLP VVGKIPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEDGSASYA CRFTQTNRFI
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGLVDP AHGTGVANAG LVYFNNRLLA MSEDDLPYQV RITPGGDLKT VGRYDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGE KSPDVEIQLD QPTMMHDFAI TENFVVIPDQ QVVFKLQEMI RGGSPVIYDK EKVARFGILD KYAADSSGIR
401: WIEAPDCFCF HLWNAWEEPE TEEVVVIGSC MTPPDSIFNE SDENLKSVLC EIRLNLRTGE STRRPIISDG DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLATGEVKKH LYGDDRYGGE PLFLPGEGAE DDGHILCFVH DEMTWTSELQ IVNAVSLEVE ATVKLPSRVP YGFHGTFIGA SDLANQV

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.