Factsheet for Bra007826.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34748	Canola	endoplasmic reticulum, extracellular	76.13	94.41
AT3G63520.1	Thale cress	cytosol	76.63	85.32
Bra007825.1-P	Field mustard	plastid	75.63	78.78
Bra040449.1-P	Field mustard	cytosol	70.45	77.15
VIT_13s0064g00810.t01	Wine grape	cytosol	63.11	74.12
VIT_13s0064g00840.t01	Wine grape	extracellular	66.44	72.89
Solyc01g087250.2.1	Tomato	cytosol, plastid	65.61	72.11
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	64.77	70.93
OQU93261	Sorghum	cytosol	64.11	70.59
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	63.44	70.37
TraesCS5D01G001900.1	Wheat	cytosol, golgi	64.27	70.13
Os12t0640600-01	Rice	plasma membrane	63.11	70.0
TraesCS5A01G001500.2	Wheat	cytosol	63.94	69.89
Zm00001d048373_P002	Maize	cytosol, plasma membrane	63.94	69.64
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	63.61	69.53
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	65.94	68.82
Solyc01g087260.2.1	Tomato	plastid	61.94	68.07
HORVU5Hr1G000320.9	Barley	plastid	63.77	67.37
TraesCS5B01G001800.1	Wheat	cytosol	60.1	66.67
TraesCS5D01G002800.1	Wheat	cytosol	61.27	66.61
HORVU4Hr1G006300.1	Barley	cytosol	60.93	65.77
TraesCS5A01G002400.1	Wheat	cytosol	61.27	65.19
Zm00001d034075_P001	Maize	cytosol	3.84	63.89
TraesCS5A01G002200.1	Wheat	cytosol	56.09	63.52
TraesCS5D01G002900.1	Wheat	plastid	59.27	57.82
Bra001552.1-P	Field mustard	cytosol	24.71	37.37
Bra013378.1-P	Field mustard	peroxisome	30.88	36.71
Bra012603.1-P	Field mustard	cytosol	25.04	33.94
Bra020970.1-P	Field mustard	plastid	30.05	31.75
Bra008358.1-P	Field mustard	plastid	31.05	31.69
Bra032359.1-P	Field mustard	plastid	30.72	31.29
Bra021558.1-P	Field mustard	plastid	30.88	30.94
Bra015002.1-P	Field mustard	plastid	30.05	30.77
Bra035033.1-P	Field mustard	plastid	30.72	30.56
Bra027336.1-P	Field mustard	plastid	30.05	30.15
Bra013298.1-P	Field mustard	plastid	28.21	29.09

Protein Annotations

EnsemblPlants:Bra007826.1	EnsemblPlants:Bra007826.1-P	EnsemblPlantsGene:Bra007826	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055	SEG:seg	UniParc:UPI0002542D0C	UniProt:M4CUD2
MapMan:9.1.6.3.1	:	:	:	:	:

Description

AT3G63520 (E=3e-271) CCD1, ATCCD1, ATNCED1, NCED1 | CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA09:-:31106350..31110984

Molecular Weight (calculated)

67931.9 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.212

Length

599 amino acids

Sequence
(BLAST)

001: MPSLTPPLTS TDASIIGTKP YQNNSYPQNQ LSNHRPWALQ RFSPSSRWRL SLLSSVSDQT FMGEKLSDDS ILSVNPKPSK CFSSKLIDLL EALVVKLMHD
101: ASLPLHYLSG NFAPLRDETP PVKDLHVHGF LPECLNGIFL RVGPNPKFDP LAGYHWQMIH GVRIKDGKAT YVSRFVKTSR LQQEEFFGDA KLMKIGDLKG
201: FFGLVMVIMQ QLRIKLKVLD DSYGNGTANT SLIYHHGKLL ALQETDKPYV IKVLEDGDLQ TLGMTDYDKR LTHSFTAHPK VDPVTGEMFT FGCSPMPPYL
301: TYRVISKDGI MHDPVPITIS KPVMMHDFAI TETYAIFMDL PMHFRPEEMV KENKMIYSFD PTKNARFGVL PRYAKDDLMI RWFELPNCFI FHNANAWEEE
401: DEVVLITCRL ENPNLDMVSG NVEEILESFS NELYEMRFNM KTGSASQKKL SASSNYFPRI NECYTGKKNR YVYGYGTFLD GISKVTGIIK LDLHAEAETG
501: NRILQVGGNI KGIYKLGQGI YCSDAIYVPR ESAEEDDGYL IFFVHDENTG KSCVNVIDAR TMSAEPVAIV ELPHRVPYGF HALFVTEVLL NYIHILSYL

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.