Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G001900.1 | Wheat | cytosol, golgi | 98.72 | 98.54 |
| TraesCS5B01G002600.2 | Wheat | cytosol, golgi, plastid | 98.18 | 98.18 |
| HORVU5Hr1G000320.9 | Barley | plastid | 96.17 | 92.95 |
| Os12t0640600-01 | Rice | plasma membrane | 88.32 | 89.63 |
| OQU93261 | Sorghum | cytosol | 88.5 | 89.15 |
| Zm00001d048373_P002 | Maize | cytosol, plasma membrane | 89.42 | 89.09 |
| TraesCS5A01G002400.1 | Wheat | cytosol | 86.86 | 84.55 |
| GSMUA_Achr3P29770_001 | Banana | cytosol, plasma membrane | 81.93 | 82.08 |
| TraesCS5A01G002200.1 | Wheat | cytosol | 78.83 | 81.66 |
| Zm00001d034075_P001 | Maize | cytosol | 5.29 | 80.56 |
| VIT_13s0064g00810.t01 | Wine grape | cytosol | 74.27 | 79.8 |
| CDX93902 | Canola | cytosol | 75.55 | 78.86 |
| CDY53711 | Canola | cytosol | 75.0 | 78.29 |
| AT3G63520.1 | Thale cress | cytosol | 76.64 | 78.07 |
| VIT_13s0064g00840.t01 | Wine grape | extracellular | 77.74 | 78.02 |
| Solyc01g087250.2.1 | Tomato | cytosol, plastid | 77.19 | 77.61 |
| Solyc01g087260.2.1 | Tomato | plastid | 74.82 | 75.23 |
| KRH27468 | Soybean | endoplasmic reticulum, mitochondrion | 72.08 | 73.15 |
| CDY34748 | Canola | endoplasmic reticulum, extracellular | 64.05 | 72.67 |
| CDY34746 | Canola | cytosol | 16.97 | 72.66 |
| KRH20815 | Soybean | cytosol, endoplasmic reticulum, extracellular | 74.82 | 71.43 |
| Bra040449.1-P | Field mustard | cytosol | 70.44 | 70.57 |
| Bra007826.1-P | Field mustard | plastid | 69.89 | 63.94 |
| CDX76782 | Canola | mitochondrion | 70.26 | 62.91 |
| CDX76783 | Canola | plastid | 69.53 | 62.36 |
| Bra007825.1-P | Field mustard | plastid | 61.13 | 58.26 |
| CDY34747 | Canola | cytosol | 13.87 | 56.3 |
| TraesCS5A01G374000.1 | Wheat | plastid | 37.41 | 34.69 |
| TraesCS2A01G250600.1 | Wheat | plastid | 35.04 | 32.38 |
| TraesCS2A01G012300.1 | Wheat | mitochondrion, plastid | 33.03 | 31.92 |
| TraesCS6A01G271600.1 | Wheat | plastid | 35.22 | 30.2 |
| TraesCS4A01G004300.1 | Wheat | mitochondrion | 29.2 | 27.16 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G001500.2 | EnsemblPlantsGene:TraesCS5A01G001500 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016702 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF37 | PFAM:PF03055 |
| MapMan:9.1.6.3.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:1218937..1226270
Molecular Weight (calculated)
61566.0 Da
IEP (calculated)
6.213
GRAVY (calculated)
-0.283
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEAVAAAED TLKKGAVLVP APQPSKGVAS WAVDLLERLA VRLGHDKAKP LHWLSGNFAP VRDETPPAAG LPVRGHLPEC LNGEFVRVGP NPKFVPVAGY
101: HWFDGDGMIH AMRIKDGKAT YVSRYVKTSR LKQEEYFGGA KFMKIGDLKG FFGLFMVQMQ ALRKKLKILD VTYGFGTANT ALIYHHGKLL ALSEADKPYV
201: VKVLEDGDLQ TLGLLDYDKR LKHSFTAHPK VDPFTDEMFT FGYSHEPPYC TYRVITKDGV MLDPVPITIP ESVMMHDFAI TENYSIFMDL PLLFRPKEMV
301: KNGEFIYKFD PTKKGRFGIL QRYEKDEKTI RWFELPNCFI FHNANAWEEG DEVVLITCRL ENPDLDKVNG TQNEKLENFG NELYEMRFNM KTGAASQKQL
401: SVAAVDFPRI NESYTGRKQR YVYCTILDSI AKVTGVIKFD LHAEPESGKK QLEVGGNVMG IYDLGPGRFG SEAVFVPKEP GVSGEEDDGY LILFVHDENT
501: GKSEVNVIDA KTMSPDPVAV VELPNRVPYG FHAFFVNEEQ LVHQQAEV
101: HWFDGDGMIH AMRIKDGKAT YVSRYVKTSR LKQEEYFGGA KFMKIGDLKG FFGLFMVQMQ ALRKKLKILD VTYGFGTANT ALIYHHGKLL ALSEADKPYV
201: VKVLEDGDLQ TLGLLDYDKR LKHSFTAHPK VDPFTDEMFT FGYSHEPPYC TYRVITKDGV MLDPVPITIP ESVMMHDFAI TENYSIFMDL PLLFRPKEMV
301: KNGEFIYKFD PTKKGRFGIL QRYEKDEKTI RWFELPNCFI FHNANAWEEG DEVVLITCRL ENPDLDKVNG TQNEKLENFG NELYEMRFNM KTGAASQKQL
401: SVAAVDFPRI NESYTGRKQR YVYCTILDSI AKVTGVIKFD LHAEPESGKK QLEVGGNVMG IYDLGPGRFG SEAVFVPKEP GVSGEEDDGY LILFVHDENT
501: GKSEVNVIDA KTMSPDPVAV VELPNRVPYG FHAFFVNEEQ LVHQQAEV
001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
Arabidopsis Description
CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.