Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G013000.1 | Wheat | cytosol | 89.59 | 84.25 |
| Os04t0131800-00 | Rice | extracellular | 20.11 | 65.9 |
| GSMUA_Achr8P12840_001 | Banana | plastid | 55.73 | 54.86 |
| PGSC0003DMT400049305 | Potato | cytosol | 47.27 | 52.65 |
| GSMUA_Achr5P15630_001 | Banana | plastid | 55.2 | 52.6 |
| VIT_05s0051g00670.t01 | Wine grape | plastid | 52.38 | 51.65 |
| TraesCS5A01G374000.1 | Wheat | plastid | 50.62 | 48.56 |
| TraesCS2A01G250600.1 | Wheat | plastid | 49.91 | 47.72 |
| CDX77467 | Canola | plastid | 48.68 | 47.18 |
| Bra015002.1-P | Field mustard | plastid | 48.68 | 47.18 |
| CDX85148 | Canola | cytosol | 48.5 | 47.01 |
| Solyc05g053530.1.1 | Tomato | plastid | 48.32 | 47.0 |
| AT3G24220.1 | Thale cress | plastid | 47.27 | 46.45 |
| TraesCS5A01G001500.2 | Wheat | cytosol | 31.92 | 33.03 |
| TraesCS6A01G271600.1 | Wheat | plastid | 36.68 | 32.55 |
| TraesCS5A01G002400.1 | Wheat | cytosol | 31.39 | 31.62 |
| TraesCS5A01G002200.1 | Wheat | cytosol | 28.04 | 30.06 |
| TraesCS4A01G004300.1 | Wheat | mitochondrion | 24.16 | 23.26 |
Protein Annotations
| MapMan:50.1.12 | InterPro:Carotenoid_Oase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009639 | GO:GO:0010114 | GO:GO:0016020 |
| GO:GO:0016702 | GO:GO:0045549 | GO:GO:0055114 | PFAM:PF03055 | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF48 |
| EnsemblPlantsGene:TraesCS2A01G012300 | EnsemblPlants:TraesCS2A01G012300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:+:4907004..4909365
Molecular Weight (calculated)
60605.4 Da
IEP (calculated)
6.884
GRAVY (calculated)
-0.039
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MHDAALYNGH RLVSGRAATI ARISSHKLMA HCPPLRSPAP ATLPPPPSST MNALQLPFQP LKPPSTLNTT TLKGLFATAL NLLEDRVIVP LEARRQLPSC
101: VDPAVQLAGN FAPVQEMPSP LRNLGVTGEI PPALLGGVYV RNGANPLLPP TAGHHLFDGD GMLHAVSLPS SSSLAPSGAS YTCRFTRTSR LAQEEALGRC
201: AFPKAIGELH GGAGIARLAL FGLRAVTGIV DSSKGAGSAN AGLVYFGGRL LALSEDNLPY QVHVGDGGDL HTVGRFDFAG QLCSPMIAHP KVDQATGELF
301: ALSYDPVRRP YLRYFRVDPA TGEKSRDVDV ALRQPTMVHD FAITESFAVI PDQQVVYDSN DSRMRWFDVP DCFCFHVWNA WEETDHAGDG PATVVIICSC
401: MTPPDALFCE AAADAPTNLR ATLTEIRLDL RTGMSRRREL ASGLSLEAGT VNRTLLGRRT RYAYLAIAEP WPRCQGVAKV DLATGEAVAV HQYGTGRFGG
501: EASFVPAAGG DKREDEGHVV VMVHDEAAST SELAAVATVA LTCRVPYGFH GAFLTRDQLA AQRTCIS
101: VDPAVQLAGN FAPVQEMPSP LRNLGVTGEI PPALLGGVYV RNGANPLLPP TAGHHLFDGD GMLHAVSLPS SSSLAPSGAS YTCRFTRTSR LAQEEALGRC
201: AFPKAIGELH GGAGIARLAL FGLRAVTGIV DSSKGAGSAN AGLVYFGGRL LALSEDNLPY QVHVGDGGDL HTVGRFDFAG QLCSPMIAHP KVDQATGELF
301: ALSYDPVRRP YLRYFRVDPA TGEKSRDVDV ALRQPTMVHD FAITESFAVI PDQQVVYDSN DSRMRWFDVP DCFCFHVWNA WEETDHAGDG PATVVIICSC
401: MTPPDALFCE AAADAPTNLR ATLTEIRLDL RTGMSRRREL ASGLSLEAGT VNRTLLGRRT RYAYLAIAEP WPRCQGVAKV DLATGEAVAV HQYGTGRFGG
501: EASFVPAAGG DKREDEGHVV VMVHDEAAST SELAAVATVA LTCRVPYGFH GAFLTRDQLA AQRTCIS
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.