CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015002.1-P	Field mustard	plastid	100.0	100.0
CDX85148	Canola	cytosol	97.78	97.78
AT3G24220.1	Thale cress	plastid	82.73	83.88
PGSC0003DMT400049305	Potato	cytosol	57.44	66.01
VIT_05s0051g00670.t01	Wine grape	plastid	61.71	62.78
Solyc05g053530.1.1	Tomato	plastid	60.34	60.55
CDY57471	Canola	cytosol	40.85	60.35
CDX82482	Canola	cytosol	40.68	60.1
CDX98456	Canola	cytosol	25.81	59.22
GSMUA_Achr8P12840_001	Banana	plastid	56.07	56.94
CDY39117	Canola	mitochondrion	52.65	55.7
GSMUA_Achr5P15630_001	Banana	plastid	55.9	54.96
CDY33218	Canola	plastid	54.19	53.01
CDX88443	Canola	plastid	54.36	52.82
CDX97576	Canola	plastid	53.68	52.6
CDX98455	Canola	plastid	53.68	52.6
CDY52448	Canola	plastid	54.02	52.49
CDY01534	Canola	cytosol, plastid	51.97	52.14
CDY55629	Canola	cytosol, plastid	51.79	51.97
CDY61838	Canola	plastid	51.97	51.61
CDY26294	Canola	plastid	51.97	51.61
CDX78842	Canola	plastid	50.94	51.29
CDX99475	Canola	plastid	50.94	51.29
Os04t0131800-00	Rice	extracellular	14.87	50.29
TraesCS2A01G012300.1	Wheat	mitochondrion, plastid	47.18	48.68
TraesCS2D01G013000.1	Wheat	cytosol	49.57	48.09
CDX98457	Canola	plastid	25.81	47.94
CDY53711	Canola	cytosol	32.99	36.76
CDX93902	Canola	cytosol	32.99	36.76
CDX99397	Canola	plastid	35.04	34.57
CDX76489	Canola	plastid	31.28	34.4
CDX78923	Canola	plastid	34.87	34.23
CDY34748	Canola	endoplasmic reticulum, extracellular	27.86	33.75
CDX76782	Canola	mitochondrion	31.97	30.56
CDY34746	Canola	cytosol	6.67	30.47
CDX76783	Canola	plastid	31.11	29.79
CDY34747	Canola	cytosol	6.84	29.63

Protein Annotations

EnsemblPlants:CDX77467	EnsemblPlantsGene:GSBRNA2T00128331001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF48	PFAM:PF03055
ProteinID:CDX77467	ProteinID:CDX77467.1	SEG:seg	UniParc:UPI0002540D78	MapMan:11.1.1.4	:

Description

BnaA07g06050D

Coordinates

chrLK031811:+:923181..924938

Molecular Weight (calculated)

65005.9 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.321

Length

585 amino acids

Sequence
(BLAST)

001: MQHSLRSNLL PPETSSRFHL RPQIKHANIT KSQLLINNPF KKTTKPPDFP PLLTSPATSP PSPVKLKPTH HHLNPLQKLA ASMLDKIESS LVVPMEQNHP
101: LPKPTDPSIQ LSGNFAPVNE CPVQNGLEVI GNIPPCLRGV YIRNGANPMF PPLGGHHLFD GDGMIHAVSI GSDNRVSYSC RYTKTNRLVQ EAELGRSVFP
201: KPIGELHGHS GLARLALFAA RAEIGLVDAT RGMGVANAGV VYFNGRLLAM SEDDLPYHVK INGHGDLETI GRFQFDEQID CPVIAHPKVD PTTGDLHTLS
301: YNVLKKPHLK YLKFDTCGKK TRDLDITLEQ PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYDKE KMSRFGVLSK QDPTGSSVNW VDVPDCFCFH
401: LWNAWEEIAE DGDPVIVVIG SCMNPPDTIF SESGEPTRIE LTEIRLNLRT KESNRKVIVT GMNLEAGQVN RNFLGRKTRF VYLAVADPWP RCSGIAKVDL
501: ENGTVIQFKY GPGRFGGEPY FVADGEGEDE GYVMGFVRDE ERDESEFVVV DASEMKQVAA VRLPERVPYG FHGTFVSENQ LKEQV

Best Arabidopsis Sequence Match ( AT3G24220.1 )
(BLAST)

001: MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF

Arabidopsis Description

NCED69-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.