Factsheet for Os04t0131800-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 4
plastid 1
cytosol 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	cytosol, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0617400-01	Rice	cytosol	54.34	33.22
TraesCS2A01G012300.1	Wheat	mitochondrion, plastid	65.9	20.11
TraesCS2D01G013000.1	Wheat	cytosol	69.36	19.9
GSMUA_Achr5P15630_001	Banana	plastid	62.43	18.15
GSMUA_Achr8P12840_001	Banana	plastid	56.65	17.01
Os07t0154100-01	Rice	plastid	55.49	16.49
Os03t0645900-00	Rice	plastid	54.34	15.46
PGSC0003DMT400049305	Potato	cytosol	45.09	15.32
Bra015002.1-P	Field mustard	plastid	50.29	14.87
CDX77467	Canola	plastid	50.29	14.87
CDX85148	Canola	cytosol	50.29	14.87
VIT_05s0051g00670.t01	Wine grape	plastid	48.55	14.61
AT3G24220.1	Thale cress	plastid	46.24	13.86
Solyc05g053530.1.1	Tomato	plastid	45.66	13.55
Os02t0704000-01	Rice	plastid	35.84	9.72
Os12t0640600-01	Rice	plasma membrane	29.48	9.44
Os12t0435200-01	Rice	plastid	31.21	9.38
Os06t0162550-00	Rice	mitochondrion, plastid	26.01	7.87
Os09t0321200-00	Rice	plastid	24.86	7.54
Os08t0371608-00	Rice	cytosol	17.92	5.71
Os08t0369800-01	Rice	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Os04t0131800-00	EnsemblPlantsGene:Os04g0131800	EntrezGene:107275432	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF49	PFAM:PF03055	ProteinID:BAS87710.1	ProteinID:CAE02392.2	ProteinID:EAZ29559.1
RefSeq:XP_015634681.1	SEG:seg	UniParc:UPI00001B1222	UniProt:Q7XRP0	MapMan:50.1.12	:

Description

Similar to OSIGBa0103I21.6 protein. (Os04t0131800-00)

Coordinates

chr4:+:1967364..1971683

Molecular Weight (calculated)

18647.2 Da

IEP (calculated)

5.266

GRAVY (calculated)

0.029

Length

173 amino acids

Sequence
(BLAST)

001: MRWFDVPGCF CFHIWNAWDE PAVVIVCSCI TPPDALLSSV RAVLSEVRLD LRTGRYSRRE LVPGLNLEAG TVNRSLLGRR TRFTYLAVAE PWPRCRGVAK
101: VDLGTGELAA VHEYGEGRFS GEPTFVPATS ATSGTGTGGR EDDGHVVVMV HDEAAGTAEL VVLDAGKMEV AAT

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.