Factsheet for Bra015002.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77467	Canola	plastid	100.0	100.0
AT3G24220.1	Thale cress	plastid	82.73	83.88
PGSC0003DMT400049305	Potato	cytosol	57.44	66.01
VIT_05s0051g00670.t01	Wine grape	plastid	61.71	62.78
Solyc05g053530.1.1	Tomato	plastid	60.34	60.55
Bra001552.1-P	Field mustard	cytosol	40.51	59.85
Bra012603.1-P	Field mustard	cytosol	43.93	58.14
GSMUA_Achr8P12840_001	Banana	plastid	56.07	56.94
GSMUA_Achr5P15630_001	Banana	plastid	55.9	54.96
Bra021558.1-P	Field mustard	plastid	54.19	53.01
Bra008358.1-P	Field mustard	plastid	53.16	52.98
Bra027336.1-P	Field mustard	plastid	54.02	52.93
Bra035033.1-P	Field mustard	plastid	53.85	52.33
Bra032359.1-P	Field mustard	plastid	51.97	51.7
Bra013298.1-P	Field mustard	plastid	50.6	50.95
Os04t0131800-00	Rice	extracellular	14.87	50.29
TraesCS2A01G012300.1	Wheat	mitochondrion, plastid	47.18	48.68
TraesCS2D01G013000.1	Wheat	cytosol	49.57	48.09
Bra013378.1-P	Field mustard	peroxisome	33.33	38.69
Bra020970.1-P	Field mustard	plastid	32.99	34.04
Bra040449.1-P	Field mustard	cytosol	30.09	32.18
Bra007826.1-P	Field mustard	plastid	30.77	30.05
Bra007825.1-P	Field mustard	plastid	28.72	29.22

Protein Annotations

MapMan:11.1.1.4	EnsemblPlantsGene:Bra015002	EnsemblPlants:Bra015002.1	EnsemblPlants:Bra015002.1-P	InterPro:Carotenoid_Oase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009628	GO:GO:0009639	GO:GO:0010114	GO:GO:0016020	GO:GO:0016702	GO:GO:0045549
GO:GO:0046872	GO:GO:0055114	UniProt:M4DET0	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF48
UniParc:UPI0002540D78	SEG:seg	:	:	:	:

Description

AT3G24220 (E=1e-267) NCED6, ATNCED6 | NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA07:+:4431005..4432762

Molecular Weight (calculated)

65005.9 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.321

Length

585 amino acids

Sequence
(BLAST)

001: MQHSLRSNLL PPETSSRFHL RPQIKHANIT KSQLLINNPF KKTTKPPDFP PLLTSPATSP PSPVKLKPTH HHLNPLQKLA ASMLDKIESS LVVPMEQNHP
101: LPKPTDPSIQ LSGNFAPVNE CPVQNGLEVI GNIPPCLRGV YIRNGANPMF PPLGGHHLFD GDGMIHAVSI GSDNRVSYSC RYTKTNRLVQ EAELGRSVFP
201: KPIGELHGHS GLARLALFAA RAEIGLVDAT RGMGVANAGV VYFNGRLLAM SEDDLPYHVK INGHGDLETI GRFQFDEQID CPVIAHPKVD PTTGDLHTLS
301: YNVLKKPHLK YLKFDTCGKK TRDLDITLEQ PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYDKE KMSRFGVLSK QDPTGSSVNW VDVPDCFCFH
401: LWNAWEEIAE DGDPVIVVIG SCMNPPDTIF SESGEPTRIE LTEIRLNLRT KESNRKVIVT GMNLEAGQVN RNFLGRKTRF VYLAVADPWP RCSGIAKVDL
501: ENGTVIQFKY GPGRFGGEPY FVADGEGEDE GYVMGFVRDE ERDESEFVVV DASEMKQVAA VRLPERVPYG FHGTFVSENQ LKEQV

Best Arabidopsis Sequence Match ( AT3G24220.1 )
(BLAST)

001: MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF

Arabidopsis Description

NCED69-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.