Factsheet for Bra001552.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82482	Canola	cytosol	99.24	99.24
CDY57471	Canola	cytosol	96.97	96.97
Zm00001d027690_P001	Maize	cytosol	13.38	68.83
Zm00001d008638_P001	Maize	cytosol	14.14	68.29
Zm00001d023690_P001	Maize	cytosol	22.47	67.94
Bra012603.1-P	Field mustard	cytosol	72.73	65.16
Bra021558.1-P	Field mustard	plastid	94.44	62.54
Os12t0617400-01	Rice	cytosol	43.94	61.48
Bra027336.1-P	Field mustard	plastid	92.68	61.47
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	77.78	60.87
AT3G14440.1	Thale cress	plastid	90.15	59.6
VIT_19s0093g00550.t01	Wine grape	plastid	79.55	51.72
Solyc07g056570.1.1	Tomato	plastid	78.28	51.24
Bra032359.1-P	Field mustard	plastid	74.49	50.17
Bra008358.1-P	Field mustard	plastid	73.99	49.91
Bra035033.1-P	Field mustard	plastid	75.51	49.67
Bra013298.1-P	Field mustard	plastid	72.47	49.4
GSMUA_Achr4P22870_001	Banana	plastid	74.75	49.25
Zm00001d031086_P001	Maize	plastid	70.2	48.86
GSMUA_Achr6P31180_001	Banana	plastid	74.24	48.76
HORVU5Hr1G008050.1	Barley	plastid	73.99	48.27
GSMUA_Achr7P01250_001	Banana	plastid	72.73	47.76
TraesCS5B01G375900.1	Wheat	plastid	71.72	47.73
TraesCS5D01G383500.1	Wheat	plastid	71.72	47.73
TraesCS5B01G029300.1	Wheat	plastid	73.99	47.72
TraesCS5A01G374000.1	Wheat	plastid	71.21	47.72
GSMUA_Achr2P12950_001	Banana	plastid	70.71	47.54
Os03t0645900-00	Rice	plastid	72.98	47.53
GSMUA_Achr5P02570_001	Banana	plastid	72.98	47.38
TraesCS5D01G038800.1	Wheat	plastid	73.48	47.32
OQU88453	Sorghum	plastid	67.93	46.95
GSMUA_Achr4P31460_001	Banana	plastid	71.46	46.93
HORVU5Hr1G054970.1	Barley	cytosol	71.72	46.71
Zm00001d007876_P001	Maize	plastid	67.68	46.61
Zm00001d018819_P001	Maize	plastid	67.42	46.6
Os07t0154100-01	Rice	plastid	68.43	46.56
Zm00001d033222_P001	Maize	extracellular	70.71	46.36
EER93751	Sorghum	plastid	71.21	46.15
Zm00001d013689_P001	Maize	plastid	69.95	46.09
TraesCS2D01G251600.1	Wheat	plastid	67.42	45.88
Zm00001d041319_P001	Maize	plastid	69.95	45.86
TraesCS2B01G268400.1	Wheat	plastid	67.68	44.97
HORVU5Hr1G044510.1	Barley	cytosol	66.92	44.17
HORVU5Hr1G092850.2	Barley	plastid	71.72	44.1
TraesCS2A01G250600.1	Wheat	plastid	65.91	44.01
KRH13600	Soybean	plastid	62.12	42.78
KRH43866	Soybean	plastid	48.48	41.83
Zm00001d042076_P001	Maize	cytosol, plastid	43.69	41.19
Bra015002.1-P	Field mustard	plastid	59.85	40.51
Zm00001d022623_P001	Maize	cytosol	36.62	38.87
Zm00001d023458_P001	Maize	cytosol	11.87	33.33
Bra013378.1-P	Field mustard	peroxisome	41.67	32.74
Zm00001d000095_P001	Maize	cytosol	12.63	30.49
Zm00001d035724_P001	Maize	plastid	45.71	28.5
Bra020970.1-P	Field mustard	plastid	39.65	27.69
Bra040449.1-P	Field mustard	cytosol	36.36	26.33
Bra007826.1-P	Field mustard	plastid	37.37	24.71
Bra007825.1-P	Field mustard	plastid	32.32	22.26
Zm00001d027592_P001	Maize	mitochondrion	19.95	18.54
Zm00001d000157_P001	Maize	cytosol	3.28	12.38
Zm00001d019813_P001	Maize	plastid	3.03	6.35
Zm00001d009286_P001	Maize	plastid	3.03	4.76
Zm00001d033377_P001	Maize	plastid	3.03	4.23

Protein Annotations

EnsemblPlants:Bra001552.1	EnsemblPlants:Bra001552.1-P	EnsemblPlantsGene:Bra001552	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	UniParc:UPI0002540970	UniProt:M4CBH2	MapMan:11.1.1.4

Description

AT3G14440 (E=2e-138) NCED3, ATNCED3, STO1, SIS7 | NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA03:-:17008233..17009507

Molecular Weight (calculated)

44219.4 Da

IEP (calculated)

4.653

GRAVY (calculated)

-0.227

Length

396 amino acids

Sequence
(BLAST)

001: MVHAVEFEDG AASYACRFTQ TNRFIQERQL GRPVFPKAIG ELHGHTGIAR LMLFYSRAAA GLVDPAHGTG VANAGLVYFT NRLLAMSEDD LPYQVRITPS
101: GDLKTVGRYD FNGQLESTMI AHPKVDPESG ELFALSYDVV SKPYLKYFRF SPDGVKSPDV EINLDQPTMM HDFAITENFV VIPDQQVVFK LPEMIRGGSP
201: VVYDKEKVAR FGVLDKYAGD SSEIKWIEAP ECFCFHLWNA WEEPETEEVV VIGSTGESTR RPIISDGEEQ VNLEAGMVNR NMLGRKTRFA YLALAEPWPK
301: VSGFAKVDLF TGEVKKYLYG GDRYGGEPLF LPGDENRAED DGYILCFVHD EETWKSELQI VNAVSLEVEA TVKLPSRVPY GFHGTFIGAN DLATQV

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.