Factsheet for AT3G14440.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98455	Canola	plastid	91.32	91.62
CDY39117	Canola	mitochondrion	84.31	91.32
Bra021558.1-P	Field mustard	plastid	91.15	91.3
CDX98456	Canola	cytosol	38.73	90.98
CDY33218	Canola	plastid	90.82	90.97
Bra027336.1-P	Field mustard	plastid	90.65	90.95
CDX82482	Canola	cytosol	60.1	90.91
CDX97576	Canola	plastid	90.32	90.62
Bra001552.1-P	Field mustard	cytosol	59.6	90.15
CDX98457	Canola	plastid	47.08	89.52
CDY57471	Canola	cytosol	59.1	89.39
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	66.61	78.85
VIT_19s0093g00550.t01	Wine grape	plastid	71.62	70.44
Solyc07g056570.1.1	Tomato	plastid	71.12	70.41
Zm00001d008638_P001	Maize	cytosol	9.52	69.51
Zm00001d023690_P001	Maize	cytosol	15.19	69.47
Os12t0617400-01	Rice	cytosol	32.22	68.2
Zm00001d027690_P001	Maize	cytosol	8.68	67.53
AT1G30100.1	Thale cress	plastid	64.44	65.53
GSMUA_Achr4P22870_001	Banana	plastid	63.77	63.56
GSMUA_Achr6P31180_001	Banana	plastid	63.61	63.18
AT4G18350.1	Thale cress	cytosol, plastid	61.44	63.12
KRH43866	Soybean	plastid	48.25	62.96
TraesCS5B01G375900.1	Wheat	plastid	62.27	62.69
TraesCS5A01G374000.1	Wheat	plastid	61.6	62.44
TraesCS5D01G383500.1	Wheat	plastid	61.94	62.35
Os03t0645900-00	Rice	plastid	63.27	62.34
GSMUA_Achr5P02570_001	Banana	plastid	63.44	62.3
Zm00001d031086_P001	Maize	plastid	59.1	62.21
GSMUA_Achr7P01250_001	Banana	plastid	62.6	62.19
GSMUA_Achr2P12950_001	Banana	plastid	61.1	62.14
AT1G78390.1	Thale cress	cytosol, plastid	68.11	62.1
GSMUA_Achr4P31460_001	Banana	plastid	62.44	62.02
HORVU5Hr1G008050.1	Barley	plastid	62.77	61.94
TraesCS5B01G029300.1	Wheat	plastid	63.27	61.73
Zm00001d033222_P001	Maize	extracellular	62.1	61.59
TraesCS5D01G038800.1	Wheat	plastid	62.94	61.3
EER93751	Sorghum	plastid	62.44	61.21
Zm00001d018819_P001	Maize	plastid	58.1	60.73
Zm00001d013689_P001	Maize	plastid	60.6	60.4
OQU88453	Sorghum	plastid	57.43	60.03
Zm00001d007876_P001	Maize	plastid	57.43	59.83
TraesCS2D01G251600.1	Wheat	plastid	57.93	59.62
Zm00001d041319_P001	Maize	plastid	59.77	59.27
HORVU5Hr1G054970.1	Barley	cytosol	60.1	59.21
Os07t0154100-01	Rice	plastid	56.93	58.59
TraesCS2B01G268400.1	Wheat	plastid	58.1	58.39
HORVU5Hr1G092850.2	Barley	plastid	62.6	58.23
HORVU5Hr1G044510.1	Barley	cytosol	57.93	57.83
TraesCS2A01G250600.1	Wheat	plastid	56.93	57.5
Zm00001d000095_P001	Maize	cytosol	15.69	57.32
AT3G24220.1	Thale cress	plastid	52.75	54.77
Zm00001d000157_P001	Maize	cytosol	9.35	53.33
KRH13600	Soybean	plastid	48.41	50.43
Zm00001d023458_P001	Maize	cytosol	11.52	48.94
Zm00001d042076_P001	Maize	cytosol, plastid	33.56	47.86
Zm00001d022623_P001	Maize	cytosol	26.88	43.16
Zm00001d035724_P001	Maize	plastid	40.73	38.43
AT3G63520.1	Thale cress	cytosol	32.55	36.25
Zm00001d019813_P001	Maize	plastid	11.35	35.98
AT4G19170.1	Thale cress	plastid	33.89	34.12
Zm00001d009286_P001	Maize	plastid	12.85	30.56
Zm00001d033377_P001	Maize	plastid	13.19	27.82
Zm00001d027592_P001	Maize	mitochondrion	19.03	26.76

Protein Annotations

MapMan:11.1.1.4	EntrezGene:820667	ProteinID:AEE75526.1	ArrayExpress:AT3G14440	EnsemblPlantsGene:AT3G14440	RefSeq:AT3G14440
TAIR:AT3G14440	RefSeq:AT3G14440-TAIR-G	EnsemblPlants:AT3G14440.1	TAIR:AT3G14440.1	EMBL:AY056255	ProteinID:BAB01336.1
ProteinID:BAB70609.1	InterPro:Carotenoid_Oase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0006970
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009688	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0016702	GO:GO:0042538	GO:GO:0045549	GO:GO:0046872
GO:GO:0051213	GO:GO:0055114	Symbol:NCED3	RefSeq:NP_188062.1	PFAM:PF03055	PO:PO:0000025
PO:PO:0000258	PO:PO:0000293	PO:PO:0006203	PO:PO:0007115	PO:PO:0007611	PO:PO:0007616
PO:PO:0009005	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009046	PO:PO:0009047	PO:PO:0020030	PO:PO:0025281	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42
UniProt:Q9LRR7	UniParc:UPI000003BCE3	SEG:seg	:	:	:

Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]

Coordinates

chr3:-:4831286..4834015

Molecular Weight (calculated)

65860.2 Da

IEP (calculated)

6.298

GRAVY (calculated)

-0.283

Length

599 amino acids

Sequence
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.