CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0617400-01	Rice	cytosol	69.02	62.19
CDY57471	Canola	cytosol	81.96	52.78
CDX82482	Canola	cytosol	81.96	52.78
Zm00001d023458_P001	Maize	cytosol	25.1	45.39
CDY39117	Canola	mitochondrion	95.29	43.94
Zm00001d022623_P001	Maize	cytosol	63.92	43.7
CDX97576	Canola	plastid	96.86	41.37
CDX98455	Canola	plastid	95.69	40.87
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	79.22	39.92
CDY33218	Canola	plastid	93.33	39.8
Zm00001d042076_P001	Maize	cytosol, plastid	64.31	39.05
AT3G14440.1	Thale cress	plastid	90.98	38.73
CDY34746	Canola	cytosol	17.65	35.16
KRH13600	Soybean	plastid	79.22	35.13
Solyc07g056570.1.1	Tomato	plastid	80.0	33.72
KRH43866	Soybean	plastid	60.39	33.55
VIT_19s0093g00550.t01	Wine grape	plastid	79.61	33.33
CDY26294	Canola	plastid	74.51	32.26
CDY52448	Canola	plastid	76.08	32.23
CDY61838	Canola	plastid	74.12	32.09
CDX88443	Canola	plastid	75.29	31.89
GSMUA_Achr4P22870_001	Banana	plastid	74.12	31.45
CDX99475	Canola	plastid	70.2	30.81
GSMUA_Achr5P02570_001	Banana	plastid	73.33	30.66
CDY55629	Canola	cytosol, plastid	69.8	30.53
GSMUA_Achr7P01250_001	Banana	plastid	72.16	30.51
GSMUA_Achr6P31180_001	Banana	plastid	72.16	30.51
TraesCS5B01G375900.1	Wheat	plastid	70.98	30.42
TraesCS5D01G383500.1	Wheat	plastid	70.98	30.42
GSMUA_Achr2P12950_001	Banana	plastid	70.2	30.39
CDY01534	Canola	cytosol, plastid	69.41	30.36
TraesCS5A01G374000.1	Wheat	plastid	70.2	30.29
CDX78842	Canola	plastid	68.63	30.12
HORVU5Hr1G054970.1	Barley	cytosol	70.98	29.77
GSMUA_Achr4P31460_001	Banana	plastid	70.2	29.68
HORVU5Hr1G008050.1	Barley	plastid	70.59	29.65
Zm00001d031086_P001	Maize	plastid	65.88	29.53
Os03t0645900-00	Rice	plastid	70.2	29.44
Zm00001d018819_P001	Maize	plastid	65.88	29.32
OQU88453	Sorghum	plastid	65.88	29.32
TraesCS5B01G029300.1	Wheat	plastid	70.59	29.32
TraesCS5D01G038800.1	Wheat	plastid	70.59	29.27
Zm00001d007876_P001	Maize	plastid	65.49	29.04
TraesCS2D01G251600.1	Wheat	plastid	65.88	28.87
Os07t0154100-01	Rice	plastid	65.88	28.87
Zm00001d033222_P001	Maize	extracellular	68.24	28.81
EER93751	Sorghum	plastid	68.24	28.48
Zm00001d013689_P001	Maize	plastid	66.27	28.12
HORVU5Hr1G092850.2	Barley	plastid	70.98	28.11
TraesCS2B01G268400.1	Wheat	plastid	65.1	27.85
Zm00001d041319_P001	Maize	plastid	65.88	27.81
TraesCS2A01G250600.1	Wheat	plastid	63.14	27.15
HORVU5Hr1G044510.1	Barley	cytosol	63.53	27.0
CDX77467	Canola	plastid	59.22	25.81
CDX85148	Canola	cytosol	58.82	25.64
Zm00001d023690_P001	Maize	cytosol	12.55	24.43
CDY34748	Canola	endoplasmic reticulum, extracellular	36.47	19.25
CDX93902	Canola	cytosol	38.43	18.67
CDY53711	Canola	cytosol	38.04	18.48
Zm00001d027592_P001	Maize	mitochondrion	26.27	15.73
CDX76782	Canola	mitochondrion	37.65	15.69
CDX99397	Canola	plastid	36.08	15.51
CDX76783	Canola	plastid	36.86	15.38
CDX78923	Canola	plastid	35.69	15.27
CDX76489	Canola	plastid	31.76	15.23
Zm00001d035724_P001	Maize	plastid	32.55	13.07
Zm00001d019813_P001	Maize	plastid	2.35	3.17
Zm00001d009286_P001	Maize	plastid	2.35	2.38
Zm00001d033377_P001	Maize	plastid	2.35	2.11
Zm00001d000095_P001	Maize	cytosol	0.78	1.22
Zm00001d008638_P001	Maize	cytosol	0.0	0.0
Zm00001d000157_P001	Maize	cytosol	0.0	0.0
Zm00001d027690_P001	Maize	cytosol	0.0	0.0
CDX98457	Canola	plastid	0.0	0.0
CDY34747	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX98456	EnsemblPlantsGene:GSBRNA2T00106072001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055
ProteinID:CDX98456	ProteinID:CDX98456.1	SEG:seg	UniParc:UPI0004EE5C1F	MapMan:50.1.12	:

Description

BnaC05g39190D

Coordinates

chrLK031905:-:225786..226553

Molecular Weight (calculated)

28649.1 Da

IEP (calculated)

4.471

GRAVY (calculated)

-0.217

Length

255 amino acids

Sequence
(BLAST)

001: MMHDFAITEN FVVIPDQQVV FKLQEMIRGG SPVIYDKEKV ARFGILDKYA ADSSGIRWIE ARNCFCFHLW NAWEEPETEE VVVIGSCMTP PDSIFNESDE
101: NLKSVLSEIR LNLRTGESTR RPIISDGEEQ VNLEAGMVNR NMLGRKTKFA YLALAEPWPK VSGFAKVDLF TGEVEKHLYG DDRYGGEPLF LPGEGGGEDD
201: GYILCFVHDE MTWKSELQIV NAVSLEVEAT VKLPSRVPYG FHGTFIGASD LAKQV

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.