CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52448	Canola	plastid	97.01	97.01
AT1G78390.1	Thale cress	cytosol, plastid	87.38	80.06
CDX82482	Canola	cytosol	50.17	76.26
CDY57471	Canola	cytosol	50.0	76.01
CDX98456	Canola	cytosol	31.89	75.29
Zm00001d023690_P001	Maize	cytosol	15.78	72.52
CDY39117	Canola	mitochondrion	66.11	71.97
Zm00001d008638_P001	Maize	cytosol	9.8	71.95
Zm00001d027690_P001	Maize	cytosol	9.14	71.43
CDY33218	Canola	plastid	66.78	67.22
CDX97576	Canola	plastid	66.45	67.0
CDX98455	Canola	plastid	66.45	67.0
Os12t0617400-01	Rice	cytosol	31.4	66.78
CDY26294	Canola	plastid	63.95	65.36
CDY61838	Canola	plastid	63.62	65.03
Zm00001d031086_P001	Maize	plastid	59.47	62.92
CDX99475	Canola	plastid	60.3	62.48
CDX78842	Canola	plastid	60.3	62.48
CDY55629	Canola	cytosol, plastid	60.3	62.26
CDY01534	Canola	cytosol, plastid	60.13	62.09
TraesCS5A01G374000.1	Wheat	plastid	60.8	61.93
TraesCS5D01G383500.1	Wheat	plastid	61.13	61.85
TraesCS5B01G375900.1	Wheat	plastid	61.13	61.85
GSMUA_Achr4P22870_001	Banana	plastid	61.13	61.23
GSMUA_Achr5P02570_001	Banana	plastid	61.79	60.98
Zm00001d018819_P001	Maize	plastid	57.97	60.91
GSMUA_Achr7P01250_001	Banana	plastid	60.96	60.86
GSMUA_Achr2P12950_001	Banana	plastid	59.47	60.78
OQU88453	Sorghum	plastid	57.81	60.73
Zm00001d033222_P001	Maize	extracellular	60.8	60.6
EER93751	Sorghum	plastid	61.3	60.39
Os03t0645900-00	Rice	plastid	60.96	60.36
GSMUA_Achr6P31180_001	Banana	plastid	60.3	60.2
Os07t0154100-01	Rice	plastid	57.81	59.79
TraesCS2D01G251600.1	Wheat	plastid	57.64	59.62
Zm00001d007876_P001	Maize	plastid	56.81	59.48
HORVU5Hr1G008050.1	Barley	plastid	59.97	59.47
GSMUA_Achr4P31460_001	Banana	plastid	59.47	59.37
Zm00001d013689_P001	Maize	plastid	59.14	59.23
HORVU5Hr1G054970.1	Barley	cytosol	59.8	59.21
CDX98457	Canola	plastid	30.9	59.05
TraesCS5B01G029300.1	Wheat	plastid	60.13	58.96
Zm00001d041319_P001	Maize	plastid	59.14	58.94
TraesCS5D01G038800.1	Wheat	plastid	59.97	58.7
TraesCS2B01G268400.1	Wheat	plastid	57.81	58.39
Zm00001d000095_P001	Maize	cytosol	15.78	57.93
HORVU5Hr1G092850.2	Barley	plastid	61.3	57.3
TraesCS2A01G250600.1	Wheat	plastid	56.31	57.17
HORVU5Hr1G044510.1	Barley	cytosol	56.64	56.83
CDX77467	Canola	plastid	52.82	54.36
CDX85148	Canola	cytosol	52.33	53.85
Zm00001d000157_P001	Maize	cytosol	9.3	53.33
Zm00001d023458_P001	Maize	cytosol	11.3	48.23
Zm00001d042076_P001	Maize	cytosol, plastid	32.06	45.95
Zm00001d022623_P001	Maize	cytosol	25.91	41.82
Zm00001d035724_P001	Maize	plastid	40.03	37.95
CDY53711	Canola	cytosol	33.06	37.9
CDX93902	Canola	cytosol	32.89	37.71
CDY34746	Canola	cytosol	7.48	35.16
CDX76489	Canola	plastid	31.06	35.15
CDY34748	Canola	endoplasmic reticulum, extracellular	27.57	34.37
CDX99397	Canola	plastid	32.72	33.22
CDX78923	Canola	plastid	32.72	33.05
Zm00001d019813_P001	Maize	plastid	10.3	32.8
CDY34747	Canola	cytosol	6.98	31.11
CDX76782	Canola	mitochondrion	31.23	30.72
CDX76783	Canola	plastid	30.4	29.95
Zm00001d009286_P001	Maize	plastid	11.13	26.59
Zm00001d027592_P001	Maize	mitochondrion	17.94	25.35
Zm00001d033377_P001	Maize	plastid	11.46	24.3

Protein Annotations

EnsemblPlants:CDX88443	EnsemblPlantsGene:GSBRNA2T00147987001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF42	PFAM:PF03055	ProteinID:CDX88443	ProteinID:CDX88443.1	SEG:seg	UniParc:UPI0004EDD459
MapMan:11.1.1.4	:	:	:	:	:

Description

BnaC06g38870D

Coordinates

chrLK031855:-:1031452..1033260

Molecular Weight (calculated)

66795.3 Da

IEP (calculated)

6.555

GRAVY (calculated)

-0.281

Length

602 amino acids

Sequence
(BLAST)

001: MASTSTTLLP STSTQFLDRS SRHNLQSLSF STSSTLGNKK LNPCSVSFSN NKTFSISSSL QSPATYQPPS WKKLCNDVAS LITKTTSHNP IQRTAATILD
101: AVENAMVSHE RRRHPLPKTA DPAVQIAGNF FPVPEQPVKH NLPVTGTVPE CIQGVYVRNG ANPLHKPISG HHLFDGDGMV HAVRFNNGSV SYSCRFTETN
201: RFVQERELGR SVFPKAIGEL HGHLGIAKLM LFNARGLFGL VDPTRGLGVA NAGLVYFNGH LLAMSEDDLP YHVKVTQTGD LETSGRYDFD GQLKSTMIAH
301: PKLDPETREL FALSYDVVSK PYLKYFRFSS AGQKSPDVEI PLDQPTMIHD FAITENFVVV PDQQVVFRLP EMIRGGSPVV YDKNKKSRFG VLSKYAEDAS
401: SMRWIEVEDC FCFHLWNAWE EAETDEVVVI GSCMTPPDSI FNEHDETLQS VLSEIRLNLK TGESTRRPVI SEKLNLEAGM VNRNLLGRKT RFAYLALTEP
501: WPKVSGFAKV DLSTGEVQKY IYGDGKFGGE PLFMPEGSSD ATEDSGYVMV FVHDEENVRS ELQIINAVSL KLEATVTLPS RVPYGFHGTF ISNEDLLKQA
601: LC

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.