CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98456	Canola	cytosol	43.94	95.29
CDX82482	Canola	cytosol	67.63	94.44
CDY57471	Canola	cytosol	66.55	92.93
Bra021558.1-P	Field mustard	plastid	98.37	90.97
CDY33218	Canola	plastid	97.47	90.13
CDX98455	Canola	plastid	92.95	86.1
CDX97576	Canola	plastid	92.77	85.93
AT3G14440.1	Thale cress	plastid	91.32	84.31
CDX98457	Canola	plastid	45.57	80.0
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	71.43	78.06
Zm00001d008638_P001	Maize	cytosol	10.49	70.73
Zm00001d027690_P001	Maize	cytosol	9.76	70.13
Zm00001d023690_P001	Maize	cytosol	16.46	69.47
Os12t0617400-01	Rice	cytosol	35.44	69.26
VIT_19s0093g00550.t01	Wine grape	plastid	75.41	68.47
Solyc07g056570.1.1	Tomato	plastid	74.14	67.77
CDX88443	Canola	plastid	71.97	66.11
CDY52448	Canola	plastid	71.97	66.11
CDX99475	Canola	plastid	68.35	65.06
CDY26294	Canola	plastid	69.26	65.03
CDY61838	Canola	plastid	68.9	64.69
CDX78842	Canola	plastid	67.81	64.54
GSMUA_Achr4P22870_001	Banana	plastid	69.8	64.23
GSMUA_Achr6P31180_001	Banana	plastid	69.62	63.85
CDY55629	Canola	cytosol, plastid	67.27	63.81
CDY01534	Canola	cytosol, plastid	66.91	63.46
GSMUA_Achr7P01250_001	Banana	plastid	68.9	63.18
GSMUA_Achr5P02570_001	Banana	plastid	69.26	62.79
Zm00001d031086_P001	Maize	plastid	64.56	62.74
GSMUA_Achr2P12950_001	Banana	plastid	66.73	62.65
GSMUA_Achr4P31460_001	Banana	plastid	67.45	61.86
KRH43866	Soybean	plastid	51.18	61.66
HORVU5Hr1G008050.1	Barley	plastid	67.45	61.45
Zm00001d018819_P001	Maize	plastid	63.47	61.26
TraesCS5A01G374000.1	Wheat	plastid	65.46	61.25
TraesCS5B01G375900.1	Wheat	plastid	65.82	61.18
TraesCS5D01G383500.1	Wheat	plastid	65.82	61.18
Zm00001d033222_P001	Maize	extracellular	66.55	60.93
OQU88453	Sorghum	plastid	63.11	60.91
TraesCS5B01G029300.1	Wheat	plastid	67.45	60.75
Os03t0645900-00	Rice	plastid	66.73	60.69
TraesCS5D01G038800.1	Wheat	plastid	67.45	60.65
Zm00001d007876_P001	Maize	plastid	62.75	60.35
Zm00001d013689_P001	Maize	plastid	65.46	60.23
EER93751	Sorghum	plastid	66.37	60.07
HORVU5Hr1G054970.1	Barley	cytosol	65.64	59.7
Os07t0154100-01	Rice	plastid	62.57	59.45
TraesCS2D01G251600.1	Wheat	plastid	62.39	59.28
Zm00001d041319_P001	Maize	plastid	64.74	59.27
TraesCS2B01G268400.1	Wheat	plastid	62.57	58.05
Zm00001d000095_P001	Maize	cytosol	17.18	57.93
TraesCS2A01G250600.1	Wheat	plastid	61.66	57.5
HORVU5Hr1G044510.1	Barley	cytosol	62.21	57.33
HORVU5Hr1G092850.2	Barley	plastid	66.0	56.68
Zm00001d000157_P001	Maize	cytosol	10.31	54.29
CDX77467	Canola	plastid	55.7	52.65
CDX85148	Canola	cytosol	55.7	52.65
Zm00001d023458_P001	Maize	cytosol	13.2	51.77
Zm00001d042076_P001	Maize	cytosol, plastid	37.07	48.81
KRH13600	Soybean	plastid	50.45	48.52
Zm00001d022623_P001	Maize	cytosol	30.38	45.04
CDY53711	Canola	cytosol	35.26	37.14
Zm00001d035724_P001	Maize	plastid	42.5	37.01
CDX93902	Canola	cytosol	34.9	36.76
CDY34746	Canola	cytosol	8.5	36.72
CDX76489	Canola	plastid	34.72	36.09
Zm00001d019813_P001	Maize	plastid	12.3	35.98
CDX99397	Canola	plastid	37.43	34.91
CDX78923	Canola	plastid	37.43	34.73
CDY34748	Canola	endoplasmic reticulum, extracellular	30.02	34.37
CDX76782	Canola	mitochondrion	34.0	30.72
CDX76783	Canola	plastid	32.73	29.62
Zm00001d009286_P001	Maize	plastid	13.2	28.97
CDY34747	Canola	cytosol	7.05	28.89
Zm00001d027592_P001	Maize	mitochondrion	20.25	26.29
Zm00001d033377_P001	Maize	plastid	13.38	26.06

Protein Annotations

EnsemblPlants:CDY39117	EnsemblPlantsGene:GSBRNA2T00067283001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF42	PFAM:PF03055	ProteinID:CDY39117	ProteinID:CDY39117.1	SEG:seg	UniParc:UPI0004EE55F5
UniProt:A0A078HML6	MapMan:11.1.1.4	:	:	:	:

Description

BnaA01g29390DBnaA01g29390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HML6]

Coordinates

chrLK032440:-:263071..264869

Molecular Weight (calculated)

60994.1 Da

IEP (calculated)

5.170

GRAVY (calculated)

-0.287

Length

553 amino acids

Sequence
(BLAST)

001: MASFTTNTAV SRRWLGGNHT HPSLSSSQTS DLTKDSVTKQ MNLFQRAAAA ALDAAEGFLV SHERQHPLPK TADPSVQIAG NFAPVNEQPV RRNLPVVGTI
101: PDSIKGVYVR NGANPLHEPV TGHHFFDGDG MVHAVKFEDG SASYACRFTQ TNRFIQERQL GKPVFPKAIG ELHGHTGIAR LMLFYARAAA GLVDPGHGTG
201: VANAGLVYFN NRLLAMSEDD LPYQVRITPS GDLKTVGRYD FDGQLESTMI AHPKVDPESG ELFALSYDVV SKPYLKYFRF SPDGTKSPDV EINLEQPTMM
301: HDFAITENFV VIPDQQVVFK LPEMIRGGSP VVYDENKVAR FGVLDKYAGD SSGIKWIEAP GCFCFHLWNA WEEPETEEVV VIGSCMTPPD SIFNESDENL
401: KSVLSEIRLN LRTGESTRRP IISDGEEQVN LEAGMVNRNM LGRRTRYAYL ALAEPWPKVS GFAKVDLFTG EVEKHLYGDD RYGGEPLFLP GEGGGEDDGY
501: ILCFVHDEMT WKSELQIVNA VSLEVEATVK LPSRVPYGFH GTFIGASDLA KQV

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.