Factsheet for PGSC0003DMT400071048

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g056570.1.1	Tomato	plastid	97.63	81.65
CDX98456	Canola	cytosol	39.92	79.22
CDX82482	Canola	cytosol	61.26	78.28
Bra001552.1-P	Field mustard	cytosol	60.87	77.78
CDY57471	Canola	cytosol	60.87	77.78
CDY39117	Canola	mitochondrion	78.06	71.43
PGSC0003DMT400039054	Potato	plastid	79.05	68.97
Zm00001d008638_P001	Maize	cytosol	10.87	67.07
VIT_19s0093g00550.t01	Wine grape	plastid	80.43	66.83
AT3G14440.1	Thale cress	plastid	78.85	66.61
CDY33218	Canola	plastid	78.66	66.56
Os12t0617400-01	Rice	cytosol	37.15	66.43
Zm00001d027690_P001	Maize	cytosol	10.08	66.23
Bra021558.1-P	Field mustard	plastid	78.06	66.05
Bra027336.1-P	Field mustard	plastid	77.87	66.0
CDX98455	Canola	plastid	77.67	65.83
CDX97576	Canola	plastid	77.47	65.66
Zm00001d023690_P001	Maize	cytosol	16.8	64.89
GSMUA_Achr4P22870_001	Banana	plastid	74.51	62.73
GSMUA_Achr2P12950_001	Banana	plastid	72.13	61.97
KRH43866	Soybean	plastid	55.53	61.22
Zm00001d031086_P001	Maize	plastid	68.77	61.16
GSMUA_Achr5P02570_001	Banana	plastid	73.52	60.98
OQU88453	Sorghum	plastid	68.18	60.21
GSMUA_Achr7P01250_001	Banana	plastid	71.54	60.03
PGSC0003DMT400049305	Potato	cytosol	60.28	59.92
TraesCS5A01G374000.1	Wheat	plastid	69.96	59.9
GSMUA_Achr6P31180_001	Banana	plastid	71.34	59.87
GSMUA_Achr4P31460_001	Banana	plastid	71.34	59.87
Zm00001d007876_P001	Maize	plastid	67.79	59.65
TraesCS5B01G375900.1	Wheat	plastid	69.96	59.5
Zm00001d018819_P001	Maize	plastid	67.19	59.34
TraesCS5D01G383500.1	Wheat	plastid	69.76	59.33
HORVU5Hr1G008050.1	Barley	plastid	70.55	58.81
HORVU5Hr1G054970.1	Barley	cytosol	70.36	58.55
Os03t0645900-00	Rice	plastid	70.16	58.39
TraesCS5B01G029300.1	Wheat	plastid	70.75	58.31
Zm00001d033222_P001	Maize	extracellular	69.37	58.11
Os07t0154100-01	Rice	plastid	66.8	58.08
Zm00001d000095_P001	Maize	cytosol	18.77	57.93
TraesCS2D01G251600.1	Wheat	plastid	66.6	57.9
TraesCS5D01G038800.1	Wheat	plastid	70.16	57.72
Zm00001d041319_P001	Maize	plastid	68.77	57.62
EER93751	Sorghum	plastid	69.57	57.61
Zm00001d013689_P001	Maize	plastid	67.39	56.74
TraesCS2B01G268400.1	Wheat	plastid	66.6	56.54
TraesCS2A01G250600.1	Wheat	plastid	66.01	56.32
HORVU5Hr1G044510.1	Barley	cytosol	66.21	55.83
HORVU5Hr1G092850.2	Barley	plastid	70.36	55.28
CDX98457	Canola	plastid	33.79	54.29
Zm00001d000157_P001	Maize	cytosol	10.67	51.43
KRH13600	Soybean	plastid	55.14	48.52
Zm00001d023458_P001	Maize	cytosol	13.44	48.23
Zm00001d042076_P001	Maize	cytosol, plastid	39.92	48.1
Zm00001d022623_P001	Maize	cytosol	32.81	44.5
PGSC0003DMT400047548	Potato	cytosol	28.66	38.16
Zm00001d035724_P001	Maize	plastid	45.06	35.91
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	16.6	35.0
PGSC0003DMT400004981	Potato	plastid	39.13	33.5
PGSC0003DMT400047553	Potato	plastid	37.15	32.7
PGSC0003DMT400004975	Potato	plastid	19.17	28.36
Zm00001d019813_P001	Maize	plastid	10.28	27.51
Zm00001d027592_P001	Maize	mitochondrion	20.75	24.65
PGSC0003DMT400011015	Potato	plastid	28.06	23.16
PGSC0003DMT400011006	Potato	cytosol	26.88	22.41
Zm00001d009286_P001	Maize	plastid	11.07	22.22
Zm00001d033377_P001	Maize	plastid	11.26	20.07

Protein Annotations

MapMan:11.1.1.4	ProteinID:AAT75151	ProteinID:AAT75151.1	EMBL:AJ276244	EMBL:AY662342	ProteinID:CAB76920
ProteinID:CAB76920.1	InterPro:Carotenoid_Oase	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0006970
GO:GO:0008150	GO:GO:0008152	GO:GO:0009414	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009628	GO:GO:0016020	GO:GO:0016702	GO:GO:0042538	GO:GO:0045549
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	UniProt:M1CN51	PFAM:PF03055	EnsemblPlantsGene:PGSC0003DMG400027633
PGSC:PGSC0003DMG400027633	EnsemblPlants:PGSC0003DMT400071048	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	UniParc:UPI0002958135	:

Description

9-cis-epoxycarotenoid dioxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400027633]

Coordinates

chr7:-:51778895..51781175

Molecular Weight (calculated)

56496.4 Da

IEP (calculated)

5.496

GRAVY (calculated)

-0.312

Length

506 amino acids

Sequence
(BLAST)

001: MALDAVEGAL TKHELEHPLP KTADPRVQIS GNFAPVPENP VCQSLPVTGK IPKCVQGVYV RNGANPLFEP TAGHHFFDGD GMVHAVQFKN GSASYACRFT
101: ETERFVQEKA LGRPVFPKAI GELHGHSGIA RLMLFYARGL FGLIDHSRGT GVANAGLVYF NNRLLAMSED DLPYHVKVTP TGDLKTEGRF DFDGQLKSTM
201: IAHPKLDPVS GELFALSYDV IQKPYLKYFR FSKNGEKSND VEIPVEDPTM MHDFAITEKF VIIPDQQVVF KMSEMIRGGS PVVYDKNKVS RFGILDKYAK
301: DGSDLKWVEV PDCFCFHLWN AWEEPETDEI VVIGSCMTPP DSIFNECDEG LKSVLSEIRL NLKTGKSTRK AIIENPDEQV NLEAGMVNRN KLGRKTQYAY
401: LAIAEPWPKV SGFAKVDLFT GEVEKFIYGD NKYGGEPLFL PRDPNSKEED DGYILAFVHD EKEWTSELQI VNAMTLKLEA TVKLPSRVPY GFHGTFINAN
501: DLANQA

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.