Factsheet for PGSC0003DMT400047548

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047553	Potato	plastid	97.63	64.52
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	40.53	64.17
PGSC0003DMT400004981	Potato	plastid	66.32	42.64
VIT_02s0087g00930.t01	Wine grape	plastid	59.47	38.37
Os12t0435200-01	Rice	plastid	50.53	33.33
TraesCS6B01G298800.1	Wheat	plastid	55.53	32.81
KXG30924	Sorghum	plastid	55.0	32.81
TraesCS6D01G251800.1	Wheat	plastid	55.0	32.71
TraesCS6A01G271600.1	Wheat	plastid	55.0	32.71
HORVU6Hr1G068720.1	Barley	plastid	55.26	32.66
Zm00001d051556_P001	Maize	plastid	54.74	32.6
Zm00001d017766_P001	Maize	plastid	53.95	32.08
Os02t0704000-01	Rice	plastid	53.68	31.97
GSMUA_Achr4P19020_001	Banana	plastid	43.42	31.37
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	38.16	28.66
PGSC0003DMT400049305	Potato	cytosol	34.74	25.93
PGSC0003DMT400004975	Potato	plastid	22.63	25.15
PGSC0003DMT400039054	Potato	plastid	36.84	24.14
PGSC0003DMT400011006	Potato	cytosol	25.26	15.82
PGSC0003DMT400011015	Potato	plastid	25.0	15.5

Protein Annotations

EnsemblPlants:PGSC0003DMT400047548	EnsemblPlantsGene:PGSC0003DMG400018480	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF46	PFAM:PF03055	PGSC:PGSC0003DMG400018480	UniParc:UPI0002969F91	UniProt:M1BKZ6	MapMan:9.1.6.3.2

Description

Carotenoid cleavage dioxygenase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400018480]

Coordinates

chr8:-:3615970..3618462

Molecular Weight (calculated)

42750.9 Da

IEP (calculated)

6.571

GRAVY (calculated)

-0.016

Length

380 amino acids

Sequence
(BLAST)

001: MSITRIIIGQ FDPSNGFGPA NTSLALFGGK LFALYESDIP YAIKLAPNGD IITIGCHNFD GNLSINMTAH PKIDPNTNEV FAFRYDPILF PYLTYVRIHP
101: NGVKSHDLPI FSMTRPSFVH DFAITKNYAI FPDIQIEMNL LGLITGGAPV GTNSRKVPRL GVIPRYAIDE SEMRWFEVPV FNMMHAINAW EEDNGDTIVV
201: IAPNILSIEH FLKRLDLVHA KIEQVKIDLK TGRVSRNLMS KRNLELACIN RAYIGKKNKY IYAAIPDPLP KAKGVVKLDV SMLEIDQQPD CIVATRIFGP
301: NCFCSEPFFV PKDHDNVFAA DEDNGYVVCY MHNESTRESS FMVMDAKTHD LEIVAVVKLP HRVPYGFHGI FVKESDLNML

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.