Factsheet for PGSC0003DMT400004975

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000764
PGSC0003DMT400028376

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	PGSC0003DMT400028376	AT5G17790.1	15340011
AT4G19170.1	PGSC0003DMT400000764	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075480.2.1	Tomato	plastid	88.01	52.17
PGSC0003DMT400004981	Potato	plastid	81.58	47.21
VIT_02s0087g00910.t01	Wine grape	plastid	61.7	35.23
Bra013378.1-P	Field mustard	peroxisome	51.46	34.92
PGSC0003DMT400047553	Potato	plastid	56.73	33.74
CDX76489	Canola	plastid	52.05	33.46
CDX99397	Canola	plastid	57.89	33.39
CDX78923	Canola	plastid	57.89	33.22
AT4G19170.1	Thale cress	plastid	57.31	32.94
KRH76475	Soybean	plastid	56.43	32.71
Bra020970.1-P	Field mustard	plastid	54.09	32.63
TraesCS6D01G251800.1	Wheat	plastid	50.29	26.92
TraesCS6A01G271600.1	Wheat	plastid	50.0	26.76
HORVU6Hr1G068720.1	Barley	plastid	50.0	26.59
TraesCS6B01G298800.1	Wheat	plastid	50.0	26.59
KXG30924	Sorghum	plastid	49.12	26.37
Zm00001d051556_P001	Maize	plastid	48.83	26.18
Os02t0704000-01	Rice	plastid	48.54	26.02
Zm00001d017766_P001	Maize	plastid	47.95	25.67
Os12t0435200-01	Rice	plastid	42.69	25.35
PGSC0003DMT400047548	Potato	cytosol	25.15	22.63
GSMUA_Achr4P19020_001	Banana	plastid	33.04	21.48
PGSC0003DMT400049305	Potato	cytosol	28.66	19.25
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	28.36	19.17
PGSC0003DMT400039054	Potato	plastid	29.24	17.24
PGSC0003DMT400011006	Potato	cytosol	19.3	10.87
PGSC0003DMT400011015	Potato	plastid	19.3	10.77
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	2.05	2.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400004975	EnsemblPlantsGene:PGSC0003DMG402001968	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF46	PFAM:PF03055	PGSC:PGSC0003DMG402001968	SEG:seg	UniParc:UPI0002969F7D	UniProt:M0ZP98
MapMan:50.1.12	:	:	:	:	:

Description

Carotenoid cleavage dioxygenase 4a [Source:PGSC_GENE;Acc:PGSC0003DMG402001968]

Coordinates

chr8:-:47360292..47362256

Molecular Weight (calculated)

38027.1 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.363

Length

342 amino acids

Sequence
(BLAST)

001: MDALSSTSLS TLSQHPKSLL SFNNNNYYYY SPNTSSSFTL KVFSIGGEEP IPSPPKRQPI SSRKPSFPSN IFNTFDDFVN TYIDPPRKSC VDPKYVLSNN
101: FAPVDELPPT ECKVVEGSLP SCLDGAYIRN GPNPQNLPRG PYHLFDGDGM LHSIKISQGK DTFCSRFVKT YKYNIENETG FQIIPNVFSD FNGLLPSVTR
201: GAITLARLIA GQFNPANGIG LANTSLALFG GKLFALGESD LPYAVKIALD GDIITLSRHN FNGKLVKSMT AHPKIDPETN EAFAYRYGPF PPFLTYFRVD
301: PNGIKTADVP IFSIKRPTLF HDIANHKKIR DIFRHTNRNE PD

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.