Factsheet for TraesCS6B01G298800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G353800.1
TraesCS1D01G356800.1
TraesCS3A01G287400.1
TraesCS3A01G339100.1
TraesCS3B01G321600.1
TraesCS3B01G370800.2
TraesCS3D01G286900.1
TraesCS3D01G332700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	TraesCS3A01G339100.1	AT5G17790.1	15340011
AT4G19170.1	TraesCS3B01G370800.2	AT5G17790.1	15340011
AT4G19170.1	TraesCS3D01G332700.1	AT5G17790.1	15340011
AT4G19170.1	TraesCS1A01G353800.1	AT5G56760.1	21798944
AT4G19170.1	TraesCS1D01G356800.1	AT5G56760.1	21798944
AT4G19170.1	TraesCS3A01G287400.1	AT5G56760.1	21798944
AT4G19170.1	TraesCS3B01G321600.1	AT5G56760.1	21798944
AT4G19170.1	TraesCS3D01G286900.1	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G271600.1	Wheat	plastid	97.51	98.12
TraesCS6D01G251800.1	Wheat	plastid	97.05	97.65
HORVU6Hr1G068720.1	Barley	plastid	97.2	97.2
KXG30924	Sorghum	plastid	77.61	78.34
Os02t0704000-01	Rice	plastid	77.45	78.06
Zm00001d051556_P001	Maize	plastid	76.52	77.12
Zm00001d017766_P001	Maize	plastid	76.36	76.84
Bra013378.1-P	Field mustard	peroxisome	52.1	66.47
CDX78923	Canola	plastid	54.28	58.56
PGSC0003DMT400004981	Potato	plastid	53.65	58.38
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	21.77	58.33
AT4G19170.1	Thale cress	plastid	53.97	58.32
CDX99397	Canola	plastid	53.65	58.18
VIT_02s0087g00930.t01	Wine grape	plastid	52.88	57.73
VIT_02s0087g00910.t01	Wine grape	plastid	53.65	57.6
CDX76489	Canola	plastid	47.59	57.52
Solyc08g075490.2.1	Tomato	plastid	52.72	57.07
Bra020970.1-P	Field mustard	plastid	50.23	56.97
KRH76475	Soybean	plastid	52.1	56.78
PGSC0003DMT400047548	Potato	cytosol	32.81	55.53
Solyc08g075480.2.1	Tomato	plastid	49.46	55.11
PGSC0003DMT400047553	Potato	plastid	47.28	52.87
VIT_16s0039g01370.t01	Wine grape	plastid	43.7	50.36
PGSC0003DMT400004975	Potato	plastid	26.59	50.0
GSMUA_Achr4P19020_001	Banana	plastid	40.75	49.81
TraesCS5B01G375900.1	Wheat	plastid	35.15	37.98
TraesCS2B01G268400.1	Wheat	plastid	34.68	37.42
TraesCS5B01G029300.1	Wheat	plastid	33.75	35.34
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	29.55	34.67
TraesCS5B01G001800.1	Wheat	cytosol	27.99	33.33
TraesCS4B01G300700.1	Wheat	plastid	23.79	25.33
TraesCS5B01G180500.1	Wheat	cytosol	23.33	22.35

Protein Annotations

EnsemblPlants:TraesCS6B01G298800.1	EnsemblPlantsGene:TraesCS6B01G298800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0010287	GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46
PFAM:PF03055	SEG:seg	MapMan:9.1.6.3.2	:	:	:

Description

No Description!

Coordinates

chr6B:-:536814425..536816720

Molecular Weight (calculated)

69265.4 Da

IEP (calculated)

6.329

GRAVY (calculated)

-0.194

Length

643 amino acids

Sequence
(BLAST)

001: MEGALVTSNF SMPDLYPAKA NAAHAARSRR LSYISPAASS AAAPNPSYRR RKGTSPPPPW AAATATVLTS PPKPVEQQET EEHLVDTSVN NATGTRVATA
101: RTSRASDAPR QAARSSRPRR RPVTSLQAAF CNALEEAINT FVDPPVLRPS VDPRHVLSAN FAPVDELPPT PCPVVRGVIP RCLAGGAYIR NGPNPQHLPR
201: GPHHLFDGDG MLHSLLLPTA PDSDPVLCSR YVQTYKYIVE RNAGEPVLPN VFSGFHGLAG MARGAVTAAR VLTGQMNPME GVGLANTSLA VFGGRLYALG
301: ESDLPYAVRV DPATGEVTTL GRCDFGGRLS MGMTAHPKKD PITGELFAFR YGPMPPFVTY FRFDPAGNKG ADVPIFSVKQ PSFLHDFAVT EHYAIFPEIQ
401: IVMNPMGMVV GGGSPVGADP GMVPRLGVIP KYAADESEMR WFEVPGFNMM HSVNAWEEAG GDEIVMVAPN ILSIEHTLER MELIHASVEL VRINLRTGNV
501: TRTPLAAANL DFGVINPSCL GRRNRYGYFG VGDPMPKIGG VAKLDFDRAG HGDCTVARRD FGPGCFAGEP FFVPDDVEGN GDEDDGYVVC YVHDEGTGDN
601: RFVVMDAQSP DLDIVAEVQL PSRVPYGFHG LFVTQAELRS QHQ

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.