Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0087g00910.t01 | Wine grape | plastid | 52.51 | 48.91 |
| VIT_02s0087g00930.t01 | Wine grape | plastid | 51.08 | 48.39 |
| TraesCS6A01G271600.1 | Wheat | plastid | 50.36 | 43.98 |
| TraesCS6D01G251800.1 | Wheat | plastid | 50.18 | 43.82 |
| TraesCS6B01G298800.1 | Wheat | plastid | 50.36 | 43.7 |
| KXG30924 | Sorghum | plastid | 49.82 | 43.64 |
| Zm00001d051556_P001 | Maize | plastid | 49.64 | 43.42 |
| Os02t0704000-01 | Rice | plastid | 49.64 | 43.42 |
| Os12t0435200-01 | Rice | plastid | 44.8 | 43.4 |
| HORVU6Hr1G068720.1 | Barley | plastid | 50.0 | 43.39 |
| Zm00001d017766_P001 | Maize | plastid | 49.64 | 43.35 |
| GSMUA_Achr4P19020_001 | Banana | plastid | 34.95 | 37.07 |
| VIT_13s0064g00810.t01 | Wine grape | cytosol | 32.62 | 35.69 |
| VIT_13s0064g00840.t01 | Wine grape | extracellular | 33.15 | 33.88 |
| VIT_05s0051g00670.t01 | Wine grape | plastid | 31.9 | 30.96 |
| VIT_10s0003g03750.t01 | Wine grape | plastid | 32.8 | 30.25 |
| VIT_19s0093g00550.t01 | Wine grape | plastid | 32.97 | 30.21 |
| VIT_04s0008g03510.t01 | Wine grape | cytosol | 23.84 | 23.46 |
| VIT_11s0016g02740.t01 | Wine grape | cytosol | 6.99 | 20.86 |
| VIT_04s0008g03480.t01 | Wine grape | cytosol | 24.91 | 20.0 |
| VIT_04s0008g03450.t01 | Wine grape | plastid | 12.72 | 16.44 |
Protein Annotations
| ArrayExpress:VIT_16s0039g01370 | EMBL:FN595750 | EnsemblPlants:VIT_16s0039g01370.t01 | EnsemblPlantsGene:VIT_16s0039g01370 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 |
| InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF58 | PFAM:PF03055 | ProteinID:CCB50569 | ProteinID:CCB50569.1 |
| SEG:seg | UniParc:UPI0002108D75 | UniProt:F6HEC3 | MapMan:50.1.12 | : | : |
Description
No Description!
Coordinates
chr16:-:789473..791221
Molecular Weight (calculated)
62098.1 Da
IEP (calculated)
5.725
GRAVY (calculated)
-0.197
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSFAFFQIQ PLQRSNQPNS PISFFNGNIA QYCSLPKKNM IIASELSTSE RAPSPPKLPN IGSDRDTNSE GLGKGALEFL ESFLSFFSTS LLYFINPPLH
101: PSVDPKHVLT GNFAQVDELP PIDCLVVEGE LPQSLNGTYI RNGPNPLHQP RGPHHLFEGD GMLHSIRLSD GRATFCSRYV KTYKYALEDN VGFPIFPNIL
201: SGFHSFGLAN TSLSLFSNRL FALGESDLPY SIHLSEEGDI ETIGRCDFDG KAFINMTAHP KIDPETGETF AFRCSPIPPY ITFFSIDKEG SKQQDVPIFS
301: MTDPTFVHDF SITKQYIVFS ESQIEMNPLR LMMCKGMPVS AELDKVPRIG VLPRYASTDS EIRWFEAPGF NAMHAINAWE EGDEEIILVA PNAISIENLF
401: HSIEKVHFSL EKVRINLRSG SVTRTTLSQK NLELGSINPS YVGKRNRYGY MGIGKMIPKM SGVVKIDLEL ECEVSRRLYG AGCFGGEPLF VAKDGASEED
501: DGYIVSYVHD EKSGASRFVV MDAKSQTLDV VAAVKLPRRV PYGFHGLFVK DGDIREIH
101: PSVDPKHVLT GNFAQVDELP PIDCLVVEGE LPQSLNGTYI RNGPNPLHQP RGPHHLFEGD GMLHSIRLSD GRATFCSRYV KTYKYALEDN VGFPIFPNIL
201: SGFHSFGLAN TSLSLFSNRL FALGESDLPY SIHLSEEGDI ETIGRCDFDG KAFINMTAHP KIDPETGETF AFRCSPIPPY ITFFSIDKEG SKQQDVPIFS
301: MTDPTFVHDF SITKQYIVFS ESQIEMNPLR LMMCKGMPVS AELDKVPRIG VLPRYASTDS EIRWFEAPGF NAMHAINAWE EGDEEIILVA PNAISIENLF
401: HSIEKVHFSL EKVRINLRSG SVTRTTLSQK NLELGSINPS YVGKRNRYGY MGIGKMIPKM SGVVKIDLEL ECEVSRRLYG AGCFGGEPLF VAKDGASEED
501: DGYIVSYVHD EKSGASRFVV MDAKSQTLDV VAAVKLPRRV PYGFHGLFVK DGDIREIH
001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL
Arabidopsis Description
CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.