Factsheet for VIT_11s0016g02740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066720.1.1	Tomato	cytosol	57.75	26.09
VIT_04s0008g03480.t01	Wine grape	cytosol	94.65	25.47
VIT_04s0008g03510.t01	Wine grape	cytosol	77.01	25.4
KRH52736	Soybean	mitochondrion, plastid	68.98	21.98
KRH62063	Soybean	cytosol	51.34	19.88
KRH52732	Soybean	plastid	59.89	19.28
KRH62062	Soybean	cytosol, plastid	58.82	19.0
PGSC0003DMT400011006	Potato	cytosol	58.82	18.12
PGSC0003DMT400011015	Potato	plastid	57.75	17.62
Os06t0162550-00	Rice	mitochondrion, plastid	48.13	15.73
KXG19379	Sorghum	mitochondrion, plastid	48.13	15.13
Zm00001d045232_P001	Maize	plastid	44.92	13.7
VIT_13s0064g00810.t01	Wine grape	cytosol	23.53	8.63
VIT_13s0064g00840.t01	Wine grape	extracellular	23.53	8.06
VIT_05s0051g00670.t01	Wine grape	plastid	22.99	7.48
VIT_02s0087g00910.t01	Wine grape	plastid	22.99	7.18
VIT_16s0039g01370.t01	Wine grape	plastid	20.86	6.99
VIT_10s0003g03750.t01	Wine grape	plastid	21.39	6.61
VIT_02s0087g00930.t01	Wine grape	plastid	20.32	6.45
VIT_19s0093g00550.t01	Wine grape	plastid	20.32	6.24
VIT_04s0008g03450.t01	Wine grape	plastid	8.02	3.47

Protein Annotations

ArrayExpress:VIT_11s0016g02740	EMBL:FN595756	EnsemblPlants:VIT_11s0016g02740.t01	EnsemblPlantsGene:VIT_11s0016g02740	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF30	PFAM:PF03055	ProteinID:CBI27963	ProteinID:CBI27963.3
UniParc:UPI0001BE2FC0	UniProt:D7TBC8	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr11:+:2170747..2172292

Molecular Weight (calculated)

20950.1 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.191

Length

187 amino acids

Sequence
(BLAST)

001: MKDAHGDWII SYKNRYVESE TFKLEKQRNK PSFLPAVEGD SPAIIAAYLL NMLRFGMVNK QISSTSIFEH SGKFYAFAQN HLPQEIDIFT LETLEEWDVN
101: GAWDRPFTSH PKKAPGTGEL VIIGIDGQRP FIVAGVISAD GNTLSHKVDL KFNRVTLIHE IGVTQKYNVI MDCPLTVDMN RLVAGGP

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.