Factsheet for VIT_02s0087g00910.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g01170.t01
VIT_11s0016g02450.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	VIT_08s0056g01170.t01	AT5G17790.1	15340011
AT4G19170.1	VIT_11s0016g02450.t01	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013378.1-P	Field mustard	peroxisome	61.27	72.82
PGSC0003DMT400004981	Potato	plastid	70.12	71.07
Solyc08g075490.2.1	Tomato	plastid	69.62	70.2
VIT_02s0087g00930.t01	Wine grape	plastid	68.28	69.44
KRH76475	Soybean	plastid	65.78	66.78
AT4G19170.1	Thale cress	plastid	66.28	66.72
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	26.71	66.67
CDX99397	Canola	plastid	65.78	66.44
CDX78923	Canola	plastid	65.61	65.94
CDX76489	Canola	plastid	58.43	65.79
Bra020970.1-P	Field mustard	plastid	62.27	65.78
Solyc08g075480.2.1	Tomato	plastid	62.77	65.16
PGSC0003DMT400004975	Potato	plastid	35.23	61.7
TraesCS6D01G251800.1	Wheat	plastid	57.76	54.15
TraesCS6A01G271600.1	Wheat	plastid	57.76	54.15
HORVU6Hr1G068720.1	Barley	plastid	57.76	53.81
TraesCS6B01G298800.1	Wheat	plastid	57.6	53.65
Os02t0704000-01	Rice	plastid	56.59	53.13
KXG30924	Sorghum	plastid	56.26	52.9
Zm00001d051556_P001	Maize	plastid	56.09	52.66
VIT_16s0039g01370.t01	Wine grape	plastid	48.91	52.51
Zm00001d017766_P001	Maize	plastid	55.26	51.8
Os12t0435200-01	Rice	plastid	48.58	50.52
GSMUA_Achr4P19020_001	Banana	plastid	41.57	47.34
VIT_13s0064g00810.t01	Wine grape	cytosol	32.05	37.65
VIT_13s0064g00840.t01	Wine grape	extracellular	32.39	35.53
VIT_05s0051g00670.t01	Wine grape	plastid	32.89	34.26
VIT_19s0093g00550.t01	Wine grape	plastid	34.06	33.5
VIT_10s0003g03750.t01	Wine grape	plastid	33.22	32.89
VIT_04s0008g03510.t01	Wine grape	cytosol	23.54	24.87
VIT_11s0016g02740.t01	Wine grape	cytosol	7.18	22.99
VIT_04s0008g03480.t01	Wine grape	cytosol	23.87	20.58
VIT_04s0008g03450.t01	Wine grape	plastid	12.35	17.13

Protein Annotations

EntrezGene:100251100	wikigene:100251100	MapMan:9.1.6.3.2	ProteinID:AFJ94675	ProteinID:AFJ94675.1	EMBL:AM475518
ProteinID:CAN72836	ProteinID:CAN72836.1	ProteinID:CCB52213	ProteinID:CCB52213.1	InterPro:Carotenoid_Oase	UniProt:F6HJ16
EMBL:FN595769	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EMBL:JQ712827	EntrezGene:LOC100251100
wikigene:LOC100251100	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	UniParc:UPI0001982BE6	ArrayExpress:VIT_02s0087g00910
EnsemblPlantsGene:VIT_02s0087g00910	EnsemblPlants:VIT_02s0087g00910.t01	unigene:Vvi.10706	RefSeq:XP_002268404	RefSeq:XP_002268404.1	SEG:seg

Description

No Description!

Coordinates

chr2:-:18560696..18562591

Molecular Weight (calculated)

65904.0 Da

IEP (calculated)

7.390

GRAVY (calculated)

-0.236

Length

599 amino acids

Sequence
(BLAST)

001: MDAFSSSFLS STFTFPSLTT RPPIAPSSLP QIPSLNISAV RIEEKQPQSL TAETSSQSSK TQVHKPPPPP PRRAALPTRN IPKKGAAEPS LPVTIFNALD
101: DVINNFIDPP LRSSVDPRYV LSQNFAPVEE LPPTECEVTD GSLPPWLDGA YIRNGPNPQF LPRGPYHLFD GDGMLHSIRI SQGRAILCSR YVKTYKYTIE
201: RRAGSPILPN VFSGFNGLTA SAARGALSAA RILTGQFNPV NGIGLANTSL ALFGGRLYAL GESDLPYSLR LKPDGDIETL GRHDFDGKLV MSMTAHPKVD
301: PETGEAFAFR YGPVPPFLTY FRFDAQGRKQ PDVPIFSLTS PSFLHDFGIT KKYAIFADIQ IGMNPVEMVT GGSPVGTVPN KVPRLGIIPR YAKDESEMRW
401: FNVPGFNIVH SINAWDEEDA IIMVAPNILS VEHTLERLDM IHASVEMVRI DLKTGMVTRH PLSTRNLDFA VINPGYVGKK NKYVYAAVGN PMPKISGVVK
501: LDVSQTERKE CIVGSRMYGP GCYGGEPFFV AREPDNPEAE EDDGYIVSYV HDEKSGESKF LVMDAKTPNL DIVAAVRLPR RVPYGFHGLF VRERDIKGL

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.