Factsheet for VIT_13s0064g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g00810.t01	Wine grape	cytosol	89.74	96.08
Solyc01g087250.2.1	Tomato	cytosol, plastid	81.69	81.83
CDX93902	Canola	cytosol	78.57	81.71
CDY53711	Canola	cytosol	78.57	81.71
AT3G63520.1	Thale cress	cytosol	80.4	81.6
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	80.95	80.8
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	79.3	80.19
CDY34746	Canola	cytosol	18.5	78.91
TraesCS5D01G001900.1	Wheat	cytosol, golgi	78.94	78.51
TraesCS5A01G001500.2	Wheat	cytosol	78.02	77.74
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	77.84	77.55
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	81.5	77.53
Solyc01g087260.2.1	Tomato	plastid	76.37	76.51
OQU93261	Sorghum	cytosol	76.01	76.29
Zm00001d048373_P002	Maize	cytosol, plasma membrane	76.56	76.0
Os12t0640600-01	Rice	plasma membrane	74.91	75.74
CDY34748	Canola	endoplasmic reticulum, extracellular	66.48	75.16
Zm00001d034075_P001	Maize	cytosol	4.95	75.0
HORVU5Hr1G000320.9	Barley	plastid	77.66	74.78
Bra040449.1-P	Field mustard	cytosol	74.18	74.04
TraesCS5D01G002800.1	Wheat	cytosol	72.89	72.23
TraesCS5B01G001800.1	Wheat	cytosol	71.43	72.22
HORVU4Hr1G006300.1	Barley	cytosol	71.98	70.81
TraesCS5A01G002400.1	Wheat	cytosol	72.16	69.98
TraesCS5A01G002200.1	Wheat	cytosol	67.58	69.75
Bra007826.1-P	Field mustard	plastid	72.89	66.44
CDX76782	Canola	mitochondrion	74.36	66.34
CDX76783	Canola	plastid	73.63	65.79
TraesCS5D01G002900.1	Wheat	plastid	71.61	63.68
Bra007825.1-P	Field mustard	plastid	65.2	61.91
CDY34747	Canola	cytosol	15.02	60.74
VIT_05s0051g00670.t01	Wine grape	plastid	36.26	34.43
VIT_10s0003g03750.t01	Wine grape	plastid	37.55	33.88
VIT_16s0039g01370.t01	Wine grape	plastid	33.88	33.15
VIT_02s0087g00910.t01	Wine grape	plastid	35.53	32.39
VIT_19s0093g00550.t01	Wine grape	plastid	36.08	32.35
VIT_02s0087g00930.t01	Wine grape	plastid	34.8	32.26
VIT_04s0008g03510.t01	Wine grape	cytosol	28.21	27.16
VIT_11s0016g02740.t01	Wine grape	cytosol	8.06	23.53
VIT_04s0008g03480.t01	Wine grape	cytosol	28.21	22.16
VIT_04s0008g03450.t01	Wine grape	plastid	14.29	18.06

Protein Annotations

EntrezGene:100232972	wikigene:100232972	EntrezGene:100249903	wikigene:100249903	MapMan:9.1.6.3.1	ProteinID:AAX48772
ProteinID:AAX48772.1	ProteinID:AFJ94677	ProteinID:AFJ94677.1	ProteinID:AFJ94678	ProteinID:AFJ94678.1	ProteinID:AFJ94679
ProteinID:AFJ94679.1	ProteinID:AFJ94680	ProteinID:AFJ94680.1	ProteinID:AFJ94681	ProteinID:AFJ94681.1	EMBL:AY856353
ProteinID:CBI24894	ProteinID:CBI24894.3	EntrezGene:CCD1	wikigene:CCD1	InterPro:Carotenoid_Oase	UniProt:D7T313
EMBL:FN595509	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EMBL:JQ712829	EMBL:JQ712830
EMBL:JQ712831	EMBL:JQ712832	EMBL:JQ712833	EntrezGene:LOC100249903	wikigene:LOC100249903	RefSeq:NP_001267844.1
PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	TIGR:TC62780	UniParc:UPI0001984A9D	ArrayExpress:VIT_13s0064g00840
EnsemblPlantsGene:VIT_13s0064g00840	EnsemblPlants:VIT_13s0064g00840.t01	unigene:Vvi.1318	RefSeq:XP_002278628	RefSeq:XP_002278628.1	:

Description

Carotenoid cleavage dioxygenase 1 [Source:UniProtKB/TrEMBL;Acc:D7T313]

Coordinates

chr13:+:22672994..22681910

Molecular Weight (calculated)

61638.3 Da

IEP (calculated)

6.566

GRAVY (calculated)

-0.271

Length

546 amino acids

Sequence
(BLAST)

001: MPKKMAEKEE QGGAGVVVVD PTPSKGFTSK AVDWLEKLIV KLMHDSSQPL HYLSGNFAPV RDETPPCKNL PVIGYLPECL NGEFVRVGPN PKFSPVAGYH
101: WFDGDGMIHG LHIKDGKATY VSRYVRTSRL KQEEYFGGAK FMRIGDLKGL FGLLMVNMQM LRAKLKILDV SYGTGTGNTA LVYHHGKLLA LSEADKPYVL
201: KVLEDGDLQT LGMLDYDKRL THSFTAHPKV DPFTGEMFSF GYSHTPPYIT YRVISKDGFM HEPVPITISD PIMMHDFAIT ENYAIFMDLP LYFRPKEMVK
301: EKKLIFTFDA TKKARFGVLP RYAKNELHIK WFELPNCFIF HNANAWEEED EVVLITCRLE NPDLDLVGGD VKEKLENFGN ELYEMRFNMK TGIASQRKLS
401: ASSVDFPRVN ESYTGRKQRY VYGTILDSIA KVTGIIKFDL HAEPDTGKSK LEVGGNVQGI FDLGVGRFGS EAVFVPREPG ITSEEDDGYL IFFIHDEKTG
501: KSYVNVIDAK TMSPDPIAIV ELPNRVPYGF HAFFVTEEQL KEQAKL

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.