Factsheet for GSMUA_Achr3P29770_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034075_P001	Maize	cytosol	5.48	83.33
VIT_13s0064g00810.t01	Wine grape	cytosol	77.33	82.94
TraesCS5D01G001900.1	Wheat	cytosol, golgi	82.63	82.33
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	82.08	81.93
TraesCS5A01G001500.2	Wheat	cytosol	82.08	81.93
VIT_13s0064g00840.t01	Wine grape	extracellular	80.8	80.95
Os12t0640600-01	Rice	plasma membrane	79.89	80.93
Solyc01g087250.2.1	Tomato	cytosol, plastid	80.62	80.92
CDX93902	Canola	cytosol	77.51	80.76
OQU93261	Sorghum	cytosol	79.89	80.33
Zm00001d048373_P002	Maize	cytosol, plasma membrane	80.62	80.18
CDY53711	Canola	cytosol	76.78	80.0
HORVU5Hr1G000320.9	Barley	plastid	81.9	79.01
AT3G63520.1	Thale cress	cytosol	77.15	78.44
TraesCS5D01G002800.1	Wheat	cytosol	76.78	76.22
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	74.77	75.74
Solyc01g087260.2.1	Tomato	plastid	75.32	75.6
TraesCS5B01G001800.1	Wheat	cytosol	74.41	75.37
HORVU4Hr1G006300.1	Barley	cytosol	75.32	74.23
TraesCS5A01G002400.1	Wheat	cytosol	76.23	74.07
CDY34748	Canola	endoplasmic reticulum, extracellular	65.27	73.91
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	76.97	73.34
CDY34746	Canola	cytosol	17.0	72.66
TraesCS5A01G002200.1	Wheat	cytosol	70.02	72.4
Bra040449.1-P	Field mustard	cytosol	71.85	71.85
TraesCS5D01G002900.1	Wheat	plastid	74.22	66.12
Bra007826.1-P	Field mustard	plastid	70.93	64.77
CDX76783	Canola	plastid	71.12	63.67
CDX76782	Canola	mitochondrion	71.12	63.56
Bra007825.1-P	Field mustard	plastid	61.61	58.61
CDY34747	Canola	cytosol	14.26	57.78
GSMUA_Achr8P12840_001	Banana	plastid	36.75	34.9
GSMUA_Achr6P31180_001	Banana	plastid	38.39	34.83
GSMUA_Achr2P12950_001	Banana	plastid	36.93	34.3
GSMUA_Achr4P22870_001	Banana	plastid	36.93	33.61
GSMUA_Achr7P01250_001	Banana	plastid	36.93	33.5
GSMUA_Achr4P31460_001	Banana	plastid	36.38	33.0
GSMUA_Achr5P02570_001	Banana	plastid	36.75	32.95
GSMUA_Achr5P15630_001	Banana	plastid	35.65	32.77
GSMUA_Achr4P19020_001	Banana	plastid	27.97	29.09

Protein Annotations

MapMan:9.1.6.3.1	InterPro:Carotenoid_Oase	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005794	GO:GO:0005886	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016118	GO:GO:0016121	GO:GO:0016124
GO:GO:0016702	GO:GO:0045549	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G29770_001	EnsemblPlants:GSMUA_Achr3P29770_001
EnsemblPlants:GSMUA_Achr3T29770_001	UniProt:M0SIZ3	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	UniParc:UPI000295BA64
SEG:seg	:	:	:	:	:

Description

Carotenoid 9,10(9',10')-cleavage dioxygenase [Source:GMGC_GENE;Acc:GSMUA_Achr3G29770_001]

Coordinates

chr3:+:28776347..28788314

Molecular Weight (calculated)

61841.6 Da

IEP (calculated)

6.469

GRAVY (calculated)

-0.256

Length

547 amino acids

Sequence
(BLAST)

001: MGVKEQLLQE EEEEKRGVVA VNPKPKKGLV SATVDLIERV IVYLMHDRKT PLHYLAGNFA PVRDETPPCT DLPVRGTLPE CLNGEFVRVG PNPKFVPVAG
101: YHWFDGDGMI HGMRIKDGKA TYVSRYVKTS RLKQEEYFGG AKFMKIGDLK GLFGLFMVQM QLLRAKLKIL DVSYGTGTAN TALVYHHGKL LALSEADKPY
201: IVRVLEDGDL QTLGMLDYDK RLAHSFTAHP KVDPVTDEMF TFGYSHVPPY VTYRVITKDG VMLDPVPITI PDPVMMHDFA ITENYAIFMD LPLYFQPKEM
301: VKGKLIFNFD ATKKSRFGVL PRYAKDELHI RWFELPNCYI FHNANAWEEG DEVVLITCRL QNPDLDQVNG AVKDHLENFT NELYEMRFNM KSGAASQKQL
401: SVSAVDFPRI NESYTGRKQR YVYCTILDSI AKVKGIIKFD LHAEPELGKK KLEVGGNVKG IFDLGPGRYG SEAVFVPHKP GFSSEEDDGY LIFFVHDENT
501: GKSEVNVIDA KTMSADPVAV VELPTRVPYG FHAFFVTEEQ LQRQVEA

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.