Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G002200.1 | Wheat | cytosol | 81.6 | 94.71 |
| TraesCS5D01G002800.1 | Wheat | cytosol | 79.64 | 88.75 |
| HORVU4Hr1G006300.1 | Barley | cytosol | 79.32 | 87.75 |
| TraesCS5D01G001900.1 | Wheat | cytosol, golgi | 74.92 | 83.79 |
| Os12t0640600-01 | Rice | plasma membrane | 72.8 | 82.78 |
| OQU93261 | Sorghum | cytosol | 71.99 | 81.25 |
| Zm00001d048373_P002 | Maize | cytosol, plasma membrane | 72.48 | 80.91 |
| Zm00001d034075_P001 | Maize | cytosol | 4.4 | 75.0 |
| GSMUA_Achr3P29770_001 | Banana | cytosol, plasma membrane | 66.12 | 74.22 |
| VIT_13s0064g00810.t01 | Wine grape | cytosol | 60.26 | 72.55 |
| CDX93902 | Canola | cytosol | 61.24 | 71.62 |
| VIT_13s0064g00840.t01 | Wine grape | extracellular | 63.68 | 71.61 |
| CDY53711 | Canola | cytosol | 61.07 | 71.43 |
| Solyc01g087250.2.1 | Tomato | cytosol, plastid | 63.35 | 71.38 |
| AT3G63520.1 | Thale cress | cytosol | 62.38 | 71.19 |
| Solyc01g087260.2.1 | Tomato | plastid | 62.05 | 69.91 |
| CDY34746 | Canola | cytosol | 14.5 | 69.53 |
| CDY34748 | Canola | endoplasmic reticulum, extracellular | 53.42 | 67.91 |
| KRH27468 | Soybean | endoplasmic reticulum, mitochondrion | 58.96 | 67.04 |
| KRH20815 | Soybean | cytosol, endoplasmic reticulum, extracellular | 61.4 | 65.68 |
| Bra040449.1-P | Field mustard | cytosol | 57.49 | 64.53 |
| Bra007826.1-P | Field mustard | plastid | 57.82 | 59.27 |
| CDX76782 | Canola | mitochondrion | 58.63 | 58.82 |
| CDX76783 | Canola | plastid | 57.33 | 57.61 |
| Bra007825.1-P | Field mustard | plastid | 50.0 | 53.39 |
| CDY34747 | Canola | cytosol | 10.75 | 48.89 |
| TraesCS5D01G383500.1 | Wheat | plastid | 32.57 | 33.61 |
| TraesCS2D01G251600.1 | Wheat | plastid | 30.78 | 32.47 |
| TraesCS5D01G038800.1 | Wheat | plastid | 31.27 | 31.22 |
| TraesCS2D01G013000.1 | Wheat | cytosol | 29.8 | 30.35 |
| TraesCS6D01G251800.1 | Wheat | plastid | 29.97 | 28.8 |
| TraesCS5D01G186900.1 | Wheat | cytosol | 25.24 | 23.96 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G002900.1 | EnsemblPlantsGene:TraesCS5D01G002900 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016702 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF37 | PFAM:PF03055 |
| MapMan:9.1.6.3.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:2691736..2696340
Molecular Weight (calculated)
68921.7 Da
IEP (calculated)
7.082
GRAVY (calculated)
-0.363
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTARPGNR ATAGLANGSR PVGCSCRHCC RAVPPSSKLP SPSQRRLQYK PTQPEISAPP ATKGEDTQQK KGLAAVVVPA PRPRKGVASW ALDMLERLVV
101: RLGHDKKAEP NPWLSGNFAP VLHETPPTAG LPVRGHLPEC LNGEFLRVGA NPKFAPVAGY HWFDGDGMIH ALHIKDGKAT YVSRYVTTSR FKQEEYFGGA
201: KFMKVGDLKG LFGLFMVLTQ ELRKKLQVLD ATYGTGPANT AFIYHHGKLM ALSESDKPYV VRILEDGDLQ TLGLLEYDQR LKHPFTAHPK VDPFTDEMFT
301: FGYSHEPPYC TYRVITKDGI MLDPVPITIP ESVMMMHDFA ITANYSIFMD LPMLFRPKEM VKNDEFIYKF DPAKKARFGI LQRYEKDEKN IKWFELPNCF
401: IFHNANAWEE GSEVILITCR HNNVDLDQVN GNQSDKLEDH GNELYEMRFN MKTGAASQKQ LSVSAIDFPR INESYTGRKQ RYIYCMILES TIKVTGILKM
501: TGIIKFDLHA KPERSKEHLE VGGNVTGIYD LSPGMFCSEA VFVPKEPGVS GEEDDGYLIF FVHDENTGKS EVNVIDAKTM SADPVAVVEL PSRVPYGFHA
601: FFVNEEQLGH QVEW
101: RLGHDKKAEP NPWLSGNFAP VLHETPPTAG LPVRGHLPEC LNGEFLRVGA NPKFAPVAGY HWFDGDGMIH ALHIKDGKAT YVSRYVTTSR FKQEEYFGGA
201: KFMKVGDLKG LFGLFMVLTQ ELRKKLQVLD ATYGTGPANT AFIYHHGKLM ALSESDKPYV VRILEDGDLQ TLGLLEYDQR LKHPFTAHPK VDPFTDEMFT
301: FGYSHEPPYC TYRVITKDGI MLDPVPITIP ESVMMMHDFA ITANYSIFMD LPMLFRPKEM VKNDEFIYKF DPAKKARFGI LQRYEKDEKN IKWFELPNCF
401: IFHNANAWEE GSEVILITCR HNNVDLDQVN GNQSDKLEDH GNELYEMRFN MKTGAASQKQ LSVSAIDFPR INESYTGRKQ RYIYCMILES TIKVTGILKM
501: TGIIKFDLHA KPERSKEHLE VGGNVTGIYD LSPGMFCSEA VFVPKEPGVS GEEDDGYLIF FVHDENTGKS EVNVIDAKTM SADPVAVVEL PSRVPYGFHA
601: FFVNEEQLGH QVEW
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.