CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53711	Canola	cytosol	97.52	97.52
CDY34746	Canola	cytosol	21.33	87.5
CDY34748	Canola	endoplasmic reticulum, extracellular	76.38	83.02
VIT_13s0064g00810.t01	Wine grape	cytosol	78.1	80.39
VIT_13s0064g00840.t01	Wine grape	extracellular	81.71	78.57
Solyc01g087250.2.1	Tomato	cytosol, plastid	80.76	77.8
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	80.76	77.51
TraesCS5D01G001900.1	Wheat	cytosol, golgi	79.24	75.77
Os12t0640600-01	Rice	plasma membrane	77.71	75.56
TraesCS5A01G001500.2	Wheat	cytosol	78.86	75.55
OQU93261	Sorghum	cytosol	78.1	75.37
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	77.33	75.19
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	78.48	75.18
Zm00001d034075_P001	Maize	cytosol	5.14	75.0
Zm00001d048373_P002	Maize	cytosol, plasma membrane	77.71	74.18
CDX76782	Canola	mitochondrion	85.71	73.53
Solyc01g087260.2.1	Tomato	plastid	75.81	73.03
HORVU5Hr1G000320.9	Barley	plastid	78.86	73.02
CDX76783	Canola	plastid	84.57	72.67
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	79.24	72.47
TraesCS5B01G001800.1	Wheat	cytosol	72.95	70.93
TraesCS5D01G002800.1	Wheat	cytosol	74.29	70.78
HORVU4Hr1G006300.1	Barley	cytosol	73.52	69.55
TraesCS5A01G002400.1	Wheat	cytosol	73.9	68.92
TraesCS5A01G002200.1	Wheat	cytosol	68.38	67.86
CDY34747	Canola	cytosol	15.81	61.48
TraesCS5D01G002900.1	Wheat	plastid	71.62	61.24
CDX82482	Canola	cytosol	29.71	39.39
CDY57471	Canola	cytosol	29.33	38.89
CDX98456	Canola	cytosol	18.67	38.43
CDY39117	Canola	mitochondrion	36.76	34.9
CDY52448	Canola	plastid	38.29	33.39
CDX85148	Canola	cytosol	36.95	33.16
CDX77467	Canola	plastid	36.76	32.99
CDX88443	Canola	plastid	37.71	32.89
CDX99397	Canola	plastid	37.14	32.88
CDY33218	Canola	plastid	37.33	32.78
CDX78923	Canola	plastid	37.14	32.72
CDY61838	Canola	plastid	36.38	32.43
CDY26294	Canola	plastid	36.38	32.43
CDX76489	Canola	plastid	32.57	32.14
CDX97576	Canola	plastid	36.38	31.99
CDX98455	Canola	plastid	36.0	31.66
CDY55629	Canola	cytosol, plastid	34.48	31.05
CDY01534	Canola	cytosol, plastid	33.9	30.53
CDX78842	Canola	plastid	33.33	30.12
CDX99475	Canola	plastid	32.95	29.78
CDX98457	Canola	plastid	16.19	26.98

Protein Annotations

EnsemblPlants:CDX93902	EnsemblPlantsGene:GSBRNA2T00156720001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016702	GO:GO:0045549	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055	ProteinID:CDX93902
ProteinID:CDX93902.1	UniParc:UPI0004EE3F80	MapMan:9.1.6.3.1	:	:	:

Description

BnaC04g20610D

Coordinates

chrLK031878:-:539241..542507

Molecular Weight (calculated)

59359.7 Da

IEP (calculated)

6.334

GRAVY (calculated)

-0.257

Length

525 amino acids

Sequence
(BLAST)

001: MAENCIVSVN PKPSKGLSSK LLDLVERVVV KLMHDASLPL HYLSGNFAPV RDETPPVKDL PVVHGYLPEC LNGEFVRVGP NPKFDGDGMI HGVRIKDGKS
101: TYVSRYVKTS RLKQEEFFGA AKFMKIGDLK GFLGLLMVYL QQLRTKLKVL DVSYGHGTAN TALVYHHGKL LALSEADKPY VVKVLEDGDL QTLGMMDYDK
201: RLTHSFTAHP KVDPTTGEMF TFGYSHTPPY LTYRVISEDG IMHDPVPITI PEPIMMHDFA ITETYAIFMD LPMHFRPKEM VKEKKMVYSF DPTKKARFGV
301: LPRYAKDELM IRWFELPNCF IFHNANAWEE EDEVVLITCR LENPDLDMVS GNVKEKLENF SNELYEMRFN MKTGSASQKK LSASAVDFPR INECYTGKKQ
401: RYVYGTILDS IAKVTGIIKF DLHAEAETGK KILEVGGNIK GIYELGQGRY GSEAIYVPRE AGEEDDGYLI FFVHDENTGK SCVNVIDAKT MSAEPVAVVE
501: LPHRVPYGFH AFFVTEEQLQ EQTLT

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.