Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G002800.1 | Wheat | cytosol | 95.74 | 93.83 |
| TraesCS5A01G002400.1 | Wheat | cytosol | 95.74 | 91.83 |
| HORVU4Hr1G006300.1 | Barley | cytosol | 92.78 | 90.27 |
| TraesCS5B01G002600.2 | Wheat | cytosol, golgi, plastid | 85.93 | 84.67 |
| Os12t0640600-01 | Rice | plasma membrane | 82.96 | 82.96 |
| OQU93261 | Sorghum | cytosol | 83.15 | 82.54 |
| Zm00001d048373_P002 | Maize | cytosol, plasma membrane | 83.15 | 81.64 |
| GSMUA_Achr3P29770_001 | Banana | cytosol, plasma membrane | 75.37 | 74.41 |
| VIT_13s0064g00810.t01 | Wine grape | cytosol | 69.07 | 73.14 |
| CDX93902 | Canola | cytosol | 70.93 | 72.95 |
| CDY53711 | Canola | cytosol | 70.74 | 72.76 |
| AT3G63520.1 | Thale cress | cytosol | 71.67 | 71.93 |
| VIT_13s0064g00840.t01 | Wine grape | extracellular | 72.22 | 71.43 |
| Solyc01g087250.2.1 | Tomato | cytosol, plastid | 72.04 | 71.38 |
| CDY34746 | Canola | cytosol | 16.48 | 69.53 |
| Zm00001d034075_P001 | Maize | cytosol | 4.63 | 69.44 |
| Solyc01g087260.2.1 | Tomato | plastid | 69.81 | 69.17 |
| CDY34748 | Canola | endoplasmic reticulum, extracellular | 61.48 | 68.74 |
| KRH27468 | Soybean | endoplasmic reticulum, mitochondrion | 67.78 | 67.78 |
| Bra040449.1-P | Field mustard | cytosol | 66.48 | 65.63 |
| KRH20815 | Soybean | cytosol, endoplasmic reticulum, extracellular | 69.44 | 65.33 |
| Bra007826.1-P | Field mustard | plastid | 66.67 | 60.1 |
| CDX76782 | Canola | mitochondrion | 67.78 | 59.8 |
| CDX76783 | Canola | plastid | 66.3 | 58.59 |
| Bra007825.1-P | Field mustard | plastid | 58.7 | 55.13 |
| CDY34747 | Canola | cytosol | 13.33 | 53.33 |
| TraesCS5B01G375900.1 | Wheat | plastid | 36.67 | 33.28 |
| TraesCS2B01G268400.1 | Wheat | plastid | 34.63 | 31.38 |
| TraesCS5B01G029300.1 | Wheat | plastid | 34.44 | 30.29 |
| TraesCS6B01G298800.1 | Wheat | plastid | 33.33 | 27.99 |
| TraesCS4B01G300700.1 | Wheat | plastid | 28.7 | 25.66 |
| TraesCS5B01G180500.1 | Wheat | cytosol | 28.52 | 22.95 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G001800.1 | EnsemblPlantsGene:TraesCS5B01G001800 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016702 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF37 | PFAM:PF03055 |
| MapMan:9.1.6.3.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:2581312..2585281
Molecular Weight (calculated)
61043.5 Da
IEP (calculated)
6.517
GRAVY (calculated)
-0.323
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQDAERKGV VVPAPRPRKG VASWAVDLLE RLAVRLRHDD KKAQPLPWLS GNFAPVPDET PPAAGLPVRG HLPKCLNGEF VRVGPNPKFA PVAGMIHAMR
101: IKDGKATYVS RYVKTSRLEQ EEYFGGAKFT KIGDLKGVFG LFMVLMQELR KKLNVLDATY GIGTANTALI YHHGKLMALS ESDKPYVVKI LEDGDLQTLG
201: LLDYDKRLKH PFTAHPKIDP FTDEMFTFGY SHEHPYCTYR VITKDGIMLD PVPITIPESV MMHDFAITEN YSIFMDLPMF FRPKEMAKNG EFIYKFDPTK
301: KARFGILQRY EKDEKTIRWF ELPNCFIFHN ANAWEEGDEV ILITCRLNNL DLDQVNGHQS DQLEDPGNEL YEMRFNMKTG AASQKKLSVS AIDFPRINES
401: YTGRKQRYIY CTILESTVKV TGILKMIGII KFDLHAEPKS SKEQLEVGGN VSGIYDLGPG RFCSEAVFVP KEPGVLGEED DGYLIFFVHD ENTGKSEVNV
501: IDAKTMSSDP VAVIELPSRV PYGFHAFFVN EEQLGHQVER
101: IKDGKATYVS RYVKTSRLEQ EEYFGGAKFT KIGDLKGVFG LFMVLMQELR KKLNVLDATY GIGTANTALI YHHGKLMALS ESDKPYVVKI LEDGDLQTLG
201: LLDYDKRLKH PFTAHPKIDP FTDEMFTFGY SHEHPYCTYR VITKDGIMLD PVPITIPESV MMHDFAITEN YSIFMDLPMF FRPKEMAKNG EFIYKFDPTK
301: KARFGILQRY EKDEKTIRWF ELPNCFIFHN ANAWEEGDEV ILITCRLNNL DLDQVNGHQS DQLEDPGNEL YEMRFNMKTG AASQKKLSVS AIDFPRINES
401: YTGRKQRYIY CTILESTVKV TGILKMIGII KFDLHAEPKS SKEQLEVGGN VSGIYDLGPG RFCSEAVFVP KEPGVLGEED DGYLIFFVHD ENTGKSEVNV
501: IDAKTMSSDP VAVIELPSRV PYGFHAFFVN EEQLGHQVER
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.