CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34746	Canola	cytosol	19.93	95.31
Bra007825.1-P	Field mustard	plastid	84.48	89.91
AT3G63520.1	Thale cress	cytosol	76.14	86.62
CDX93902	Canola	cytosol	73.53	85.71
CDY53711	Canola	cytosol	72.88	84.95
CDY34748	Canola	endoplasmic reticulum, extracellular	66.34	84.06
CDX76783	Canola	plastid	82.03	82.16
VIT_13s0064g00810.t01	Wine grape	cytosol	63.24	75.88
VIT_13s0064g00840.t01	Wine grape	extracellular	66.34	74.36
Solyc01g087250.2.1	Tomato	cytosol, plastid	65.2	73.21
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	62.91	71.3
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	63.56	71.12
TraesCS5D01G001900.1	Wheat	cytosol, golgi	63.24	70.49
TraesCS5A01G001500.2	Wheat	cytosol	62.91	70.26
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	62.58	69.89
Os12t0640600-01	Rice	plasma membrane	61.44	69.63
OQU93261	Sorghum	cytosol	61.76	69.49
Zm00001d034075_P001	Maize	cytosol	4.08	69.44
Solyc01g087260.2.1	Tomato	plastid	61.44	68.99
Zm00001d048373_P002	Maize	cytosol, plasma membrane	61.93	68.91
CDY34747	Canola	cytosol	15.2	68.89
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	64.54	68.82
TraesCS5B01G001800.1	Wheat	cytosol	59.8	67.78
HORVU5Hr1G000320.9	Barley	plastid	62.75	67.72
TraesCS5D01G002800.1	Wheat	cytosol	59.97	66.61
HORVU4Hr1G006300.1	Barley	cytosol	59.8	65.95
TraesCS5A01G002400.1	Wheat	cytosol	59.64	64.83
TraesCS5A01G002200.1	Wheat	cytosol	55.72	64.46
TraesCS5D01G002900.1	Wheat	plastid	58.82	58.63
CDX82482	Canola	cytosol	25.16	38.89
CDY57471	Canola	cytosol	24.51	37.88
CDX98456	Canola	cytosol	15.69	37.65
CDY39117	Canola	mitochondrion	30.72	34.0
CDX99397	Canola	plastid	31.21	32.21
CDX85148	Canola	cytosol	30.72	32.14
CDX78923	Canola	plastid	31.21	32.05
CDX77467	Canola	plastid	30.56	31.97
CDX76489	Canola	plastid	27.78	31.95
CDY33218	Canola	plastid	31.21	31.94
CDY61838	Canola	plastid	30.72	31.92
CDY26294	Canola	plastid	30.56	31.75
CDY52448	Canola	plastid	31.05	31.56
CDX88443	Canola	plastid	30.72	31.23
CDX97576	Canola	plastid	30.39	31.16
CDY55629	Canola	cytosol, plastid	29.58	31.05
CDX98455	Canola	plastid	30.07	30.82
CDY01534	Canola	cytosol, plastid	28.92	30.36
CDX78842	Canola	plastid	28.76	30.29
CDX99475	Canola	plastid	28.43	29.95
CDX98457	Canola	plastid	13.07	25.4

Protein Annotations

EnsemblPlants:CDX76782	EnsemblPlantsGene:GSBRNA2T00127278001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055
ProteinID:CDX76782	ProteinID:CDX76782.1	UniParc:UPI0004EDED8A	MapMan:9.1.6.3.1	:	:

Description

BnaC08g33680D

Coordinates

chrLK031808:-:1046514..1055283

Molecular Weight (calculated)

69627.8 Da

IEP (calculated)

7.462

GRAVY (calculated)

-0.367

Length

612 amino acids

Sequence
(BLAST)

001: MLSLSPPSNP RGASVRHTSR LHYRHLLLPK RPHYSVTATK HYQNNHYPHN DISNHRPWSL HRFSPSSRWR RLLLNSVSNQ TFIAEKLSDD SILPVNPKPS
101: KGFSSKLIDL LEALVVKFMH DTSLPLNYLS GNFAPLRDET PPVKDLPVHG FLPECLNGEF LRVGPNPKFD GDGMIHGVRI KDGKATYVSR YVKTSRLKQE
201: EFFGAAKLMK IGDLKGIFGL LMANMQQLRT KLKVLDDSYG NGTANTALVY HHGQLLALQE TDKPYVIKVL KDGDLQTLGM IDYDKKLTHS FTAHPKVDPV
301: TGEMFTFGYS HMPPYLIYRV ISKDGIMQDP VPITISEPIM MHDFAITENY SIFMDLPMHF RPKEMVKEKK MLYSFDPTKK ARFGVLPRYA KDDLMIKWFE
401: LPNCFIFHNA NAWEEDEEVV LITCRLENPN LDMVSGNDEE VLRSFSNELY EMRFNMKTGS ASQKKLSASS VDFPRINESY TGEKQRYVYG IGTFLDGISK
501: VTGIIKFDLH AEAETSKTML QIGGNIKGIY KMGHGIYGSD PVYVPRETAE EDDGYLIFFV HDENTGKSCV NVIDAKTMSS EPVAVVELPH RVPYGFHALF
601: VTEEQLQEQT LI

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.