Factsheet for TraesCS5B01G002600.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G001500.2	Wheat	cytosol	98.18	98.18
TraesCS5D01G001900.1	Wheat	cytosol, golgi	97.99	97.81
HORVU5Hr1G000320.9	Barley	plastid	95.8	92.59
Os12t0640600-01	Rice	plasma membrane	88.5	89.81
OQU93261	Sorghum	cytosol	89.05	89.71
Zm00001d048373_P002	Maize	cytosol, plasma membrane	89.6	89.27
TraesCS5B01G001800.1	Wheat	cytosol	84.67	85.93
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	81.93	82.08
Zm00001d034075_P001	Maize	cytosol	5.29	80.56
VIT_13s0064g00810.t01	Wine grape	cytosol	73.91	79.41
CDX93902	Canola	cytosol	75.18	78.48
CDY53711	Canola	cytosol	74.64	77.9
VIT_13s0064g00840.t01	Wine grape	extracellular	77.55	77.84
AT3G63520.1	Thale cress	cytosol	76.28	77.7
Solyc01g087250.2.1	Tomato	cytosol, plastid	76.64	77.06
Solyc01g087260.2.1	Tomato	plastid	73.91	74.31
CDY34746	Canola	cytosol	17.15	73.44
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	71.72	72.78
CDY34748	Canola	endoplasmic reticulum, extracellular	63.69	72.26
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	74.27	70.91
Bra040449.1-P	Field mustard	cytosol	70.26	70.38
Bra007826.1-P	Field mustard	plastid	69.53	63.61
CDX76782	Canola	mitochondrion	69.89	62.58
CDX76783	Canola	plastid	69.16	62.03
Bra007825.1-P	Field mustard	plastid	60.77	57.91
CDY34747	Canola	cytosol	13.69	55.56
TraesCS5B01G375900.1	Wheat	plastid	37.04	34.12
TraesCS2B01G268400.1	Wheat	plastid	35.4	32.55
TraesCS5B01G029300.1	Wheat	plastid	35.4	31.6
TraesCS6B01G298800.1	Wheat	plastid	34.67	29.55
TraesCS4B01G300700.1	Wheat	plastid	29.56	26.82
TraesCS5B01G180500.1	Wheat	cytosol	28.83	23.55

Protein Annotations

EnsemblPlants:TraesCS5B01G002600.2	EnsemblPlantsGene:TraesCS5B01G002600	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055
MapMan:9.1.6.3.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:3917638..3923123

Molecular Weight (calculated)

61627.0 Da

IEP (calculated)

6.212

GRAVY (calculated)

-0.286

Length

548 amino acids

Sequence
(BLAST)

001: MGEAVAAAED TLKRGAVVVP APQPSKGVAS WAVDLLERLA VRLGHDKAKP LHWLSGNFAP VRDETPPAAG LPVRGHLPEC LNGEFVRVGP NPKFVPVAGY
101: HWFDGDGMIH AMRIKDGRAT YVSRYVKTSR LKQEEYFGGA KFMKIGDLKG FFGLFMVQMQ ALRKKLKILD VTYGFGTANT ALIYHHGKLM ALSEADKPYV
201: VKVLEDGDLQ TLGLLDYDKR LKHSFTAHPK VDPFTDEMFT FGYSHEPPYC TYRVITKDGV MLDPVPITIP ESVMMHDFAI TENYSIFMDL PLLFRPKEMV
301: KNGEFIYKFD PTKKARFGIL QRYEKDEKTI RWFELPNCFI FHNANAWEEG DEVVLITCRL ENPDLDKVNG TQNDKLENFG NELYEMRFNM KTGAASQKQL
401: SVSAVDFPRI NESYTGRKQQ YVYCTILDSI AKVTGIIKFD LHAEPESGKK QLEVGGNVMG IYDLGPGRFG SEAVFVPKEP GVSGQEDDGY LILFVHDENT
501: GKSEVNVIDA KTMSPDPVAV VELPNRVPYG FHAFFVNEEQ LVHQQAEV

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.