CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34748	Canola	endoplasmic reticulum, extracellular	71.36	90.27
CDY34746	Canola	cytosol	18.49	88.28
AT3G63520.1	Thale cress	cytosol	75.29	85.5
CDX93902	Canola	cytosol	72.67	84.57
CDY53711	Canola	cytosol	71.85	83.62
CDX76782	Canola	mitochondrion	82.16	82.03
VIT_13s0064g00810.t01	Wine grape	cytosol	62.36	74.71
VIT_13s0064g00840.t01	Wine grape	extracellular	65.79	73.63
Solyc01g087250.2.1	Tomato	cytosol, plastid	64.16	71.93
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	63.18	71.48
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	63.67	71.12
TraesCS5D01G001900.1	Wheat	cytosol, golgi	62.68	69.76
TraesCS5A01G001500.2	Wheat	cytosol	62.36	69.53
OQU93261	Sorghum	cytosol	61.87	69.49
Zm00001d034075_P001	Maize	cytosol	4.09	69.44
Os12t0640600-01	Rice	plasma membrane	61.37	69.44
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	62.03	69.16
Zm00001d048373_P002	Maize	cytosol, plasma membrane	61.87	68.73
Solyc01g087260.2.1	Tomato	plastid	61.21	68.62
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	63.83	67.94
HORVU5Hr1G000320.9	Barley	plastid	62.03	66.84
TraesCS5B01G001800.1	Wheat	cytosol	58.59	66.3
TraesCS5D01G002800.1	Wheat	cytosol	59.25	65.7
HORVU4Hr1G006300.1	Barley	cytosol	59.25	65.23
TraesCS5A01G002400.1	Wheat	cytosol	59.25	64.3
TraesCS5A01G002200.1	Wheat	cytosol	54.83	63.33
CDY34747	Canola	cytosol	13.75	62.22
TraesCS5D01G002900.1	Wheat	plastid	57.61	57.33
CDX98456	Canola	cytosol	15.38	36.86
CDX82482	Canola	cytosol	23.73	36.62
CDY57471	Canola	cytosol	23.4	36.11
CDY39117	Canola	mitochondrion	29.62	32.73
CDX99397	Canola	plastid	30.61	31.53
CDX78923	Canola	plastid	30.61	31.38
CDX76489	Canola	plastid	27.17	31.2
CDX85148	Canola	cytosol	29.79	31.11
CDX77467	Canola	plastid	29.79	31.11
CDY33218	Canola	plastid	30.11	30.77
CDY52448	Canola	plastid	30.28	30.73
CDY61838	Canola	plastid	29.62	30.73
CDY26294	Canola	plastid	29.46	30.56
CDX88443	Canola	plastid	29.95	30.4
CDX97576	Canola	plastid	29.62	30.32
CDX98455	Canola	plastid	29.3	29.98
CDY55629	Canola	cytosol, plastid	28.31	29.67
CDY01534	Canola	cytosol, plastid	27.99	29.33
CDX78842	Canola	plastid	27.5	28.92
CDX99475	Canola	plastid	27.17	28.57
CDX98457	Canola	plastid	12.77	24.76

Protein Annotations

EnsemblPlants:CDX76783	EnsemblPlantsGene:GSBRNA2T00127280001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055
ProteinID:CDX76783	ProteinID:CDX76783.1	SEG:seg	UniParc:UPI0004EDC697	MapMan:9.1.6.3.1	:

Description

BnaC08g33690D

Coordinates

chrLK031808:-:1064824..1072475

Molecular Weight (calculated)

69524.8 Da

IEP (calculated)

6.887

GRAVY (calculated)

-0.289

Length

611 amino acids

Sequence
(BLAST)

001: MPSLSPPLTS TDASIIATKP YQNNSYPQNQ LSNPRPWALQ RFSPSSRWRL SLLHSVSDQT FMAEKLSDDS ILSVNPKPSK CFSSKLIDLL ELLVVKLMHD
101: ASLPLRYLSG NFAPLRDETP PVKDLPVHGF LPECLNGIFR RVGPHPKFDP LAGYHWHFGH SDRMIHGVRI KDGKATYVSR FVKTSRLQQE EFFGDAKLMK
201: IGDLKGFFGL VMVIMQQLRI KLKVLDDSYG NGTANTSLIY HHGKLLALQE TDKPSIIFSF HFVDVIKVLE DGDLQTLGMT EYDKRLTHSF TAHPKVDPYF
301: CEMFTFGCSP MPPYLTDRVI SKDGIMHDPV PITISKPIMM HDFAITENYA IFMDLPMHFR PKEMVKEKKM IYSFDPTKKA RFGVLPRYAK DDLMIRWFEL
401: PNCFIFHNAN AWEEEDEVVL ITCRLENPNL DMVSGNVEEI LESFSNELYE MRFNMKTGSA SQKKLSASSN YFPRINEWYT GKKNRYVYGY GTVLDGIPRV
501: KGIIKFDLHA EAETGKTKLR VGGNIKGIYE MGQGTYGPDA IYVPGATAEE DDGYLIFYAH DENTGKSCVN VIDAKTMSSE PVAVVELPHR VPYGFHALFV
601: TEEQLQEQTL I

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.