Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34746 | Canola | cytosol | 20.45 | 85.94 |
| CDY34748 | Canola | endoplasmic reticulum, extracellular | 76.58 | 85.3 |
| VIT_13s0064g00810.t01 | Wine grape | cytosol | 77.51 | 81.76 |
| VIT_13s0064g00840.t01 | Wine grape | extracellular | 81.6 | 80.4 |
| Solyc01g087250.2.1 | Tomato | cytosol, plastid | 79.55 | 78.53 |
| GSMUA_Achr3P29770_001 | Banana | cytosol, plasma membrane | 78.44 | 77.15 |
| TraesCS5D01G001900.1 | Wheat | cytosol, golgi | 78.62 | 77.05 |
| OQU93261 | Sorghum | cytosol | 77.51 | 76.65 |
| TraesCS5A01G001500.2 | Wheat | cytosol | 78.07 | 76.64 |
| Bra007826.1-P | Field mustard | plastid | 85.32 | 76.63 |
| TraesCS5B01G002600.2 | Wheat | cytosol, golgi, plastid | 77.7 | 76.28 |
| CDX76782 | Canola | mitochondrion | 86.62 | 76.14 |
| Os12t0640600-01 | Rice | plasma membrane | 76.39 | 76.11 |
| KRH27468 | Soybean | endoplasmic reticulum, mitochondrion | 76.39 | 76.11 |
| CDX76783 | Canola | plastid | 85.5 | 75.29 |
| Zm00001d048373_P002 | Maize | cytosol, plasma membrane | 76.95 | 75.27 |
| HORVU5Hr1G000320.9 | Barley | plastid | 78.07 | 74.07 |
| KRH20815 | Soybean | cytosol, endoplasmic reticulum, extracellular | 78.62 | 73.69 |
| Solyc01g087260.2.1 | Tomato | plastid | 74.16 | 73.21 |
| Zm00001d034075_P001 | Maize | cytosol | 4.83 | 72.22 |
| TraesCS5D01G002800.1 | Wheat | cytosol | 73.61 | 71.87 |
| TraesCS5B01G001800.1 | Wheat | cytosol | 71.93 | 71.67 |
| HORVU4Hr1G006300.1 | Barley | cytosol | 72.68 | 70.45 |
| Bra007825.1-P | Field mustard | plastid | 75.28 | 70.43 |
| TraesCS5A01G002400.1 | Wheat | cytosol | 73.23 | 69.98 |
| TraesCS5A01G002200.1 | Wheat | cytosol | 67.66 | 68.81 |
| CDY34747 | Canola | cytosol | 16.17 | 64.44 |
| TraesCS5D01G002900.1 | Wheat | plastid | 71.19 | 62.38 |
| AT3G24220.1 | Thale cress | plastid | 36.99 | 34.49 |
| AT1G30100.1 | Thale cress | plastid | 36.43 | 33.28 |
| AT4G19170.1 | Thale cress | plastid | 36.62 | 33.11 |
| AT3G14440.1 | Thale cress | plastid | 36.25 | 32.55 |
| AT4G18350.1 | Thale cress | cytosol, plastid | 33.27 | 30.7 |
| AT1G78390.1 | Thale cress | cytosol, plastid | 37.17 | 30.44 |
Protein Annotations
| EntrezGene:825527 | MapMan:9.1.6.3.1 | ProteinID:AEE80498.1 | EMBL:AJ005813 | ArrayExpress:AT3G63520 | EnsemblPlantsGene:AT3G63520 |
| RefSeq:AT3G63520 | TAIR:AT3G63520 | RefSeq:AT3G63520-TAIR-G | EnsemblPlants:AT3G63520.1 | TAIR:AT3G63520.1 | Unigene:At.22615 |
| EMBL:BT000436 | EMBL:BT002102 | ProteinID:CAB87805.1 | Symbol:CCD1 | InterPro:Carotenoid_Oase | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006629 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016118 |
| GO:GO:0016121 | GO:GO:0016124 | GO:GO:0016491 | GO:GO:0016702 | GO:GO:0045549 | GO:GO:0046872 |
| GO:GO:0051213 | GO:GO:0055114 | RefSeq:NP_191911.1 | UniProt:O65572 | PFAM:PF03055 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF37 | UniParc:UPI000003BCE4 | SEG:seg | : |
Description
CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
Coordinates
chr3:+:23452808..23456078
Molecular Weight (calculated)
60911.5 Da
IEP (calculated)
6.473
GRAVY (calculated)
-0.250
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.