Factsheet for Solyc01g087250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087260.2.1	Tomato	plastid	83.3	83.3
VIT_13s0064g00810.t01	Wine grape	cytosol	77.8	83.14
VIT_13s0064g00840.t01	Wine grape	extracellular	81.83	81.69
CDX93902	Canola	cytosol	77.8	80.76
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	80.92	80.62
CDY53711	Canola	cytosol	77.06	80.0
AT3G63520.1	Thale cress	cytosol	78.53	79.55
TraesCS5D01G001900.1	Wheat	cytosol, golgi	77.8	77.23
TraesCS5A01G001500.2	Wheat	cytosol	77.61	77.19
Os12t0640600-01	Rice	plasma membrane	76.33	77.04
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	76.15	76.85
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	77.06	76.64
Zm00001d048373_P002	Maize	cytosol, plasma membrane	77.06	76.36
OQU93261	Sorghum	cytosol	76.15	76.29
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	79.45	75.44
Zm00001d034075_P001	Maize	cytosol	4.95	75.0
CDY34748	Canola	endoplasmic reticulum, extracellular	65.87	74.33
HORVU5Hr1G000320.9	Barley	plastid	77.25	74.25
CDY34746	Canola	cytosol	17.25	73.44
TraesCS5D01G002800.1	Wheat	cytosol	73.58	72.78
Bra040449.1-P	Field mustard	cytosol	72.48	72.21
TraesCS5B01G001800.1	Wheat	cytosol	71.38	72.04
TraesCS5A01G002400.1	Wheat	cytosol	73.03	70.69
HORVU4Hr1G006300.1	Barley	cytosol	71.93	70.63
TraesCS5A01G002200.1	Wheat	cytosol	67.16	69.19
Bra007826.1-P	Field mustard	plastid	72.11	65.61
CDX76782	Canola	mitochondrion	73.21	65.2
CDX76783	Canola	plastid	71.93	64.16
TraesCS5D01G002900.1	Wheat	plastid	71.38	63.35
Bra007825.1-P	Field mustard	plastid	63.3	60.0
CDY34747	Canola	cytosol	14.86	60.0
Solyc08g016720.1.1	Tomato	plastid	35.78	33.56
Solyc05g053530.1.1	Tomato	plastid	34.5	32.25
Solyc07g056570.1.1	Tomato	plastid	35.78	32.23
Solyc08g075490.2.1	Tomato	plastid	34.31	31.48
Solyc08g075480.2.1	Tomato	plastid	32.66	30.85
Solyc08g066720.1.1	Tomato	cytosol	21.28	28.02

Protein Annotations

EMBL:AY576001	EnsemblPlants:Solyc01g087250.2.1	EnsemblPlantsGene:Solyc01g087250.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055	SEG:seg	UniParc:UPI00003BF64F
UniProt:Q6E4P5	MapMan:9.1.6.3.1	:	:	:	:

Description

Carotenoid cleavage dioxygenase 1A [Source:UniProtKB/TrEMBL;Acc:Q6E4P5]

Coordinates

chr1:-:82184585..82195219

Molecular Weight (calculated)

61204.7 Da

IEP (calculated)

6.572

GRAVY (calculated)

-0.272

Length

545 amino acids

Sequence
(BLAST)

001: MGRKEDDGVE RIEGGVVVVN PKPRRGITAK AIDLLEWGIV KLMHDSSKPL HYLQGNFAPT DETPPLNDLV VQGHLPECLN GEFVRVGPNP KFAPVAGYHW
101: FDGDGMIHGL RIKDGKATYV SRYVRTSRLK QEEFFGGAKF MKVGDLKGLF GLFTVYMQML RTKLKVLDIS YGNSTANTAL VYHHGKLLAL SEADKPYALK
201: VLEDGDLQTL GMLDYDKRLT HSFTAHPKVD AVTGEMFTFG YAHTPPYITY RVISKDGIMQ DPVPITIPEP IMMHDFAITE NYAIMMDLPL CFRPKEMVKK
301: NKLAFTFDAT KKARFGVLPR YANNEALIRW FELPNCFIFH NANAWEEGDE VVLITCRLVN PDLDMVNGAV KEKLENFCNE LYEMRFNMKS GAASQKKLSE
401: SAVDFPRINE NYTGRKQRYV YGTTLNSIAK VTGVIKFDLH AEPETGKSQL EVGGNVQGIF DLGPGRFGSE AVFVPSRPGT EREEDDGYLI FFVHDENTGK
501: SAVNVIDAKT MSAEPVAVVE LPKRVPYGFH AFFVTEEQIQ EQAKL

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.