Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049305 | Potato | cytosol | 79.07 | 90.57 |
| VIT_05s0051g00670.t01 | Wine grape | plastid | 63.12 | 64.0 |
| Bra015002.1-P | Field mustard | plastid | 60.55 | 60.34 |
| CDX77467 | Canola | plastid | 60.55 | 60.34 |
| CDX85148 | Canola | cytosol | 60.38 | 60.17 |
| AT3G24220.1 | Thale cress | plastid | 58.83 | 59.45 |
| GSMUA_Achr8P12840_001 | Banana | plastid | 55.57 | 56.25 |
| GSMUA_Achr5P15630_001 | Banana | plastid | 54.03 | 52.94 |
| Solyc07g056570.1.1 | Tomato | plastid | 54.72 | 52.73 |
| Solyc08g016720.1.1 | Tomato | plastid | 51.8 | 51.98 |
| TraesCS2A01G012300.1 | Wheat | mitochondrion, plastid | 47.0 | 48.32 |
| TraesCS2D01G013000.1 | Wheat | cytosol | 49.57 | 47.93 |
| Os04t0131800-00 | Rice | extracellular | 13.55 | 45.66 |
| Solyc01g087250.2.1 | Tomato | cytosol, plastid | 32.25 | 34.5 |
| Solyc01g087260.2.1 | Tomato | plastid | 32.08 | 34.31 |
| Solyc08g075490.2.1 | Tomato | plastid | 34.13 | 33.5 |
| Solyc08g075480.2.1 | Tomato | plastid | 32.59 | 32.93 |
| Solyc08g066720.1.1 | Tomato | cytosol | 15.95 | 22.46 |
Protein Annotations
| MapMan:11.1.1.4 | InterPro:Carotenoid_Oase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009535 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009639 | GO:GO:0010114 |
| GO:GO:0016020 | GO:GO:0016702 | GO:GO:0045549 | GO:GO:0046872 | GO:GO:0055114 | UniProt:K4C233 |
| PFAM:PF03055 | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF48 | EnsemblPlantsGene:Solyc05g053530.1 | EnsemblPlants:Solyc05g053530.1.1 | UniParc:UPI0002766313 |
| SEG:seg | : | : | : | : | : |
Description
9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G24220) UniProtKB/Swiss-Prot;Acc:Q9LRM7]
Coordinates
chr5:-:63610661..63612412
Molecular Weight (calculated)
64963.9 Da
IEP (calculated)
8.165
GRAVY (calculated)
-0.341
Length
583 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTIKPLNSP SFSCKILINP SKKNTITLPR TRIPPLSSPS SSPSQSSSNS DESKIFPLKI DPPKLNLFQK IASSALDMLE KSIVTKLEKK HKLNRTVDPE
101: IQLEGNFAPV HESSVQHGLE VVGHIPSNLT GVYVRNGANP LYKPINGHHL FDGDGMIHAV KLDSKNNKAS YSCRFTQTSR LVQEASLGRP VFPKPIGELH
201: GHLGLARLAL FFARASLGLV DATKGTGVAN AGLVYFNGRL LAMSEDDLPY NVIIKEDGDL ESNGRYDFNG QINDPLIAHP KVDPITGEFY TLSYNILKKP
301: YLKLFKFDTC GIKSRDISIS LQNPSMIHDF AITESHVIIP DYQVVFKLSE MIRRGSPVVH DPNKVSRFGV LSKDDHDESR IKWIDVPNCF CMHLWNAWEE
401: NHEESGDMNI VIIGSCMSPP DSIFSGSDEP LKSKLTEIRL NLSTGRSTRR IIVSGMNLEA GQVNKTRLGE KTRYTFMAIA EPWPKCSGLA KIDLVTGNVT
501: KFLHGDDRFG GEPYFVPSTK EGEEDEGYLM SYVRDERNEK SELIIINAKN MKQIALVKIP KRVPYGFHGT FVSSQDLCNQ FSC
101: IQLEGNFAPV HESSVQHGLE VVGHIPSNLT GVYVRNGANP LYKPINGHHL FDGDGMIHAV KLDSKNNKAS YSCRFTQTSR LVQEASLGRP VFPKPIGELH
201: GHLGLARLAL FFARASLGLV DATKGTGVAN AGLVYFNGRL LAMSEDDLPY NVIIKEDGDL ESNGRYDFNG QINDPLIAHP KVDPITGEFY TLSYNILKKP
301: YLKLFKFDTC GIKSRDISIS LQNPSMIHDF AITESHVIIP DYQVVFKLSE MIRRGSPVVH DPNKVSRFGV LSKDDHDESR IKWIDVPNCF CMHLWNAWEE
401: NHEESGDMNI VIIGSCMSPP DSIFSGSDEP LKSKLTEIRL NLSTGRSTRR IIVSGMNLEA GQVNKTRLGE KTRYTFMAIA EPWPKCSGLA KIDLVTGNVT
501: KFLHGDDRFG GEPYFVPSTK EGEEDEGYLM SYVRDERNEK SELIIINAKN MKQIALVKIP KRVPYGFHGT FVSSQDLCNQ FSC
001: MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
Arabidopsis Description
NCED69-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.