Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77467 | Canola | plastid | 97.78 | 97.78 |
| AT3G24220.1 | Thale cress | plastid | 82.22 | 83.36 |
| PGSC0003DMT400049305 | Potato | cytosol | 57.27 | 65.82 |
| VIT_05s0051g00670.t01 | Wine grape | plastid | 61.2 | 62.26 |
| Solyc05g053530.1.1 | Tomato | plastid | 60.17 | 60.38 |
| CDY57471 | Canola | cytosol | 40.68 | 60.1 |
| CDX82482 | Canola | cytosol | 40.51 | 59.85 |
| CDX98456 | Canola | cytosol | 25.64 | 58.82 |
| GSMUA_Achr8P12840_001 | Banana | plastid | 56.24 | 57.12 |
| CDY39117 | Canola | mitochondrion | 52.65 | 55.7 |
| GSMUA_Achr5P15630_001 | Banana | plastid | 55.73 | 54.79 |
| CDY33218 | Canola | plastid | 54.02 | 52.84 |
| CDX97576 | Canola | plastid | 53.5 | 52.43 |
| CDX88443 | Canola | plastid | 53.85 | 52.33 |
| CDY01534 | Canola | cytosol, plastid | 52.14 | 52.32 |
| CDX98455 | Canola | plastid | 53.33 | 52.26 |
| CDY52448 | Canola | plastid | 53.5 | 51.99 |
| CDY55629 | Canola | cytosol, plastid | 51.79 | 51.97 |
| CDY26294 | Canola | plastid | 51.79 | 51.44 |
| CDY61838 | Canola | plastid | 51.79 | 51.44 |
| CDX99475 | Canola | plastid | 50.6 | 50.95 |
| CDX78842 | Canola | plastid | 50.6 | 50.95 |
| Os04t0131800-00 | Rice | extracellular | 14.87 | 50.29 |
| TraesCS2A01G012300.1 | Wheat | mitochondrion, plastid | 47.01 | 48.5 |
| CDX98457 | Canola | plastid | 25.81 | 47.94 |
| TraesCS2D01G013000.1 | Wheat | cytosol | 49.4 | 47.93 |
| CDY53711 | Canola | cytosol | 33.16 | 36.95 |
| CDX93902 | Canola | cytosol | 33.16 | 36.95 |
| CDX76489 | Canola | plastid | 31.28 | 34.4 |
| CDX99397 | Canola | plastid | 34.53 | 34.06 |
| CDY34748 | Canola | endoplasmic reticulum, extracellular | 28.03 | 33.95 |
| CDX78923 | Canola | plastid | 34.36 | 33.72 |
| CDX76782 | Canola | mitochondrion | 32.14 | 30.72 |
| CDY34746 | Canola | cytosol | 6.67 | 30.47 |
| CDX76783 | Canola | plastid | 31.11 | 29.79 |
| CDY34747 | Canola | cytosol | 6.84 | 29.63 |
Protein Annotations
| EnsemblPlants:CDX85148 | EnsemblPlantsGene:GSBRNA2T00142715001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016702 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF48 | PFAM:PF03055 |
| ProteinID:CDX85148 | ProteinID:CDX85148.1 | SEG:seg | UniParc:UPI0004EEEFF7 | MapMan:11.1.1.4 | : |
Description
BnaC07g07580D
Coordinates
chrLK031840:-:1421910..1423667
Molecular Weight (calculated)
65072.9 Da
IEP (calculated)
6.435
GRAVY (calculated)
-0.329
Length
585 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHSLGSNLL PPETSSRFHL RPQIKHANIT KSQLLINNPF KKTTKPPDFP PLLTSPATSP PSPVKLKLTH HHLNPLQKLA ASMLDKIESS LVVPMEQNHP
101: LPKPTDPSIQ LSGNFAPVNE CPVQNGLEVI GNIPPCLHGV YIRNGANPMF PPLGGHHLFD GDGMIHAVSI GSDNRVSYSC RYTKTNRLVQ EAKLGRSVFP
201: KSIGELHGHS GLARLALFAA RAEIGLVDAT RGMGVANAGV VYFNGRLLAM SEDDLPYHVK INGHGDLETI GRFQFDEQID CPVIAHPKVD PTTGDLHTLS
301: YNVLKKPHLK YLKFDTCGKK TRDHDITLEQ PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYDRE KMSRFGVLSN QDPTGSSVNW VDVPDCFCFH
401: LWNAWEEITE DGDPVIVVIG SCMNPPDTIF SESGEPTRIE LTEIRLNLRT KETNRKVIVT GMNLEAGQVN RNFLGRKTRF VYLAVADPWP RCSGIAKVDL
501: ENGTVIQFKY GPDRFGGEPY FVPEGEGEDE GYVMGFVRDE ERDESEFVVV DASEMKQVAA VRLPERVPYG FHGTFVSENQ LKEQV
101: LPKPTDPSIQ LSGNFAPVNE CPVQNGLEVI GNIPPCLHGV YIRNGANPMF PPLGGHHLFD GDGMIHAVSI GSDNRVSYSC RYTKTNRLVQ EAKLGRSVFP
201: KSIGELHGHS GLARLALFAA RAEIGLVDAT RGMGVANAGV VYFNGRLLAM SEDDLPYHVK INGHGDLETI GRFQFDEQID CPVIAHPKVD PTTGDLHTLS
301: YNVLKKPHLK YLKFDTCGKK TRDHDITLEQ PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYDRE KMSRFGVLSN QDPTGSSVNW VDVPDCFCFH
401: LWNAWEEITE DGDPVIVVIG SCMNPPDTIF SESGEPTRIE LTEIRLNLRT KETNRKVIVT GMNLEAGQVN RNFLGRKTRF VYLAVADPWP RCSGIAKVDL
501: ENGTVIQFKY GPDRFGGEPY FVPEGEGEDE GYVMGFVRDE ERDESEFVVV DASEMKQVAA VRLPERVPYG FHGTFVSENQ LKEQV
001: MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
Arabidopsis Description
NCED69-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.