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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra021558.1-P Field mustard plastid 97.83 97.83
CDY39117 Canola mitochondrion 90.13 97.47
CDX98456 Canola cytosol 39.8 93.33
CDX82482 Canola cytosol 61.71 93.18
CDX98457 Canola plastid 48.83 92.7
CDX98455 Canola plastid 92.31 92.46
CDX97576 Canola plastid 91.64 91.79
CDY57471 Canola cytosol 60.7 91.67
AT3G14440.1 Thale cress plastid 90.97 90.82
PGSC0003DMT400071048 Potato cytosol, mitochondrion 66.56 78.66
VIT_19s0093g00550.t01 Wine grape plastid 71.74 70.44
Solyc07g056570.1.1 Tomato plastid 70.9 70.08
Zm00001d008638_P001 Maize cytosol 9.53 69.51
Os12t0617400-01 Rice cytosol 32.61 68.9
Zm00001d027690_P001 Maize cytosol 8.86 68.83
Zm00001d023690_P001 Maize cytosol 15.05 68.7
CDY52448 Canola plastid 67.22 66.78
CDX88443 Canola plastid 67.22 66.78
CDY26294 Canola plastid 65.55 66.55
CDY61838 Canola plastid 65.38 66.38
GSMUA_Achr4P22870_001 Banana plastid 65.72 65.39
CDX99475 Canola plastid 63.21 65.06
GSMUA_Achr6P31180_001 Banana plastid 65.38 64.84
CDX78842 Canola plastid 62.54 64.37
GSMUA_Achr5P02570_001 Banana plastid 65.38 64.1
CDY55629 Canola cytosol, plastid 62.37 63.98
GSMUA_Achr2P12950_001 Banana plastid 62.88 63.84
GSMUA_Achr7P01250_001 Banana plastid 64.21 63.68
KRH43866 Soybean plastid 48.83 63.62
CDY01534 Canola cytosol, plastid 61.87 63.46
Zm00001d031086_P001 Maize plastid 60.03 63.09
GSMUA_Achr4P31460_001 Banana plastid 63.55 63.02
Zm00001d033222_P001 Maize extracellular 63.21 62.58
TraesCS5D01G383500.1 Wheat plastid 62.21 62.52
TraesCS5B01G375900.1 Wheat plastid 62.21 62.52
Os03t0645900-00 Rice plastid 63.38 62.34
TraesCS5A01G374000.1 Wheat plastid 61.54 62.27
Zm00001d018819_P001 Maize plastid 59.53 62.13
OQU88453 Sorghum plastid 59.53 62.13
HORVU5Hr1G008050.1 Barley plastid 63.04 62.11
TraesCS5B01G029300.1 Wheat plastid 63.71 62.05
TraesCS5D01G038800.1 Wheat plastid 63.71 61.95
EER93751 Sorghum plastid 63.21 61.87
Zm00001d013689_P001 Maize plastid 61.71 61.4
Zm00001d007876_P001 Maize plastid 58.86 61.22
Os07t0154100-01 Rice plastid 58.86 60.48
TraesCS2D01G251600.1 Wheat plastid 58.7 60.31
Zm00001d041319_P001 Maize plastid 60.7 60.1
HORVU5Hr1G054970.1 Barley cytosol 60.37 59.38
TraesCS2B01G268400.1 Wheat plastid 58.7 58.89
Zm00001d000095_P001 Maize cytosol 16.05 58.54
TraesCS2A01G250600.1 Wheat plastid 58.03 58.52
HORVU5Hr1G044510.1 Barley cytosol 58.36 58.17
HORVU5Hr1G092850.2 Barley plastid 62.54 58.07
Zm00001d000157_P001 Maize cytosol 9.7 55.24
CDX77467 Canola plastid 53.01 54.19
CDX85148 Canola cytosol 52.84 54.02
Zm00001d023458_P001 Maize cytosol 11.87 50.35
KRH13600 Soybean plastid 48.33 50.26
Zm00001d042076_P001 Maize cytosol, plastid 34.45 49.05
Zm00001d022623_P001 Maize cytosol 28.26 45.31
Zm00001d035724_P001 Maize plastid 40.8 38.43
CDY53711 Canola cytosol 33.11 37.71
Zm00001d019813_P001 Maize plastid 11.87 37.57
CDX93902 Canola cytosol 32.78 37.33
CDY34746 Canola cytosol 7.86 36.72
CDX76489 Canola plastid 32.61 36.65
CDX99397 Canola plastid 35.79 36.09
CDX78923 Canola plastid 35.62 35.74
CDY34748 Canola endoplasmic reticulum, extracellular 27.93 34.58
Zm00001d009286_P001 Maize plastid 13.21 31.35
CDX76782 Canola mitochondrion 31.94 31.21
CDX76783 Canola plastid 30.77 30.11
CDY34747 Canola cytosol 6.52 28.89
Zm00001d033377_P001 Maize plastid 13.55 28.52
Zm00001d027592_P001 Maize mitochondrion 18.73 26.29
Protein Annotations
EnsemblPlants:CDY33218EnsemblPlantsGene:GSBRNA2T00053960001GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0008150
GO:GO:0008152GO:GO:0016702GO:GO:0046872GO:GO:0055114InterPro:Carotenoid_OasePANTHER:PTHR10543
PANTHER:PTHR10543:SF42PFAM:PF03055ProteinID:CDY33218ProteinID:CDY33218.1SEG:segUniParc:UPI0004EEC5C1
UniProt:A0A078H8P1MapMan:11.1.1.4::::
Description
BnaC01g36910DBnaC01g36910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8P1]
Coordinates
chrLK032309:+:27825..29933
Molecular Weight (calculated)
65724.1 Da
IEP (calculated)
6.274
GRAVY (calculated)
-0.276
Length
598 amino acids
Sequence
(BLAST)
001: MASVTANTAV SRRWLGGNHT QPSLSSSQTS DLSYSCSLPM TSRVQRKLNV SSALHTPPAL LFPKQSSTSP AIVVNPKAKD SDTKQMNLFQ RAAAAALDAA
101: EGFLVSHERQ HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKIPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEDGSASYA CRFTQTNRFI
201: QERQLGKPVF PKAIGELHGH TGIARLMLFY ARAAAGLVDP GHGTGVANAG LVYFNNRLLA MSEDDLPYQV RITPSGDLKT VGRYDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVDINLE QPTMMHDFAI TENFVVIPDQ QVVFKLPEMI RGGSPVVYDE NKVARFGVLD KYAGDSSGIK
401: WIEVPGCFCF HLWNAWEEPE TEEVVVIGSC MTPPDSIFNE SNENLKSVLS EIRLNLRTGK STRRPIISDG EQQVNLEAGM VNRNMLGRKT RYAYLALAEP
501: WPKVSGFAKV DLFTGEVEKH IYGDNRYGGE PLFLPGEGGG EDDGYILCFV HDEMTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ASDLAKQV
Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)
001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV
Arabidopsis Description
NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.