Factsheet for Zm00001d042076_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022623_P001	Maize	cytosol	63.33	71.31
CDX98456	Canola	cytosol	39.05	64.31
Zm00001d018819_P001	Maize	plastid	68.1	49.91
Zm00001d007876_P001	Maize	plastid	66.9	48.87
OQU88453	Sorghum	plastid	66.43	48.69
Zm00001d023458_P001	Maize	cytosol	15.48	46.1
CDY57471	Canola	cytosol	41.19	43.69
CDX82482	Canola	cytosol	41.19	43.69
Bra001552.1-P	Field mustard	cytosol	41.19	43.69
TraesCS2D01G251600.1	Wheat	plastid	58.81	42.44
TraesCS2A01G250600.1	Wheat	plastid	59.52	42.16
Os07t0154100-01	Rice	plastid	58.1	41.92
TraesCS2B01G268400.1	Wheat	plastid	58.57	41.28
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	48.1	39.92
Bra012603.1-P	Field mustard	cytosol	41.67	39.59
Zm00001d023690_P001	Maize	cytosol	12.14	38.93
CDY39117	Canola	mitochondrion	48.81	37.07
GSMUA_Achr4P22870_001	Banana	plastid	52.86	36.94
GSMUA_Achr2P12950_001	Banana	plastid	51.19	36.5
GSMUA_Achr5P02570_001	Banana	plastid	52.86	36.39
Zm00001d031086_P001	Maize	plastid	49.05	36.2
GSMUA_Achr6P31180_001	Banana	plastid	51.67	35.99
Zm00001d013689_P001	Maize	plastid	51.43	35.94
Zm00001d033222_P001	Maize	extracellular	51.67	35.93
GSMUA_Achr7P01250_001	Banana	plastid	51.19	35.66
GSMUA_Achr4P31460_001	Banana	plastid	49.76	34.66
CDY33218	Canola	plastid	49.05	34.45
Bra021558.1-P	Field mustard	plastid	48.33	33.95
Zm00001d041319_P001	Maize	plastid	48.81	33.94
Bra027336.1-P	Field mustard	plastid	48.1	33.84
CDX98455	Canola	plastid	48.1	33.84
PGSC0003DMT400039054	Potato	plastid	46.67	33.79
Solyc07g056570.1.1	Tomato	plastid	48.57	33.72
CDX97576	Canola	plastid	47.86	33.67
AT3G14440.1	Thale cress	plastid	47.86	33.56
Solyc08g016720.1.1	Tomato	plastid	46.19	33.39
VIT_19s0093g00550.t01	Wine grape	plastid	48.1	33.17
VIT_10s0003g03750.t01	Wine grape	plastid	47.62	33.06
Bra032359.1-P	Field mustard	plastid	45.71	32.65
CDY26294	Canola	plastid	45.71	32.6
Bra008358.1-P	Field mustard	plastid	45.48	32.54
AT1G30100.1	Thale cress	plastid	45.48	32.43
CDY52448	Canola	plastid	46.43	32.39
Bra035033.1-P	Field mustard	plastid	46.43	32.39
CDY61838	Canola	plastid	45.24	32.26
CDX88443	Canola	plastid	45.95	32.06
AT4G18350.1	Thale cress	cytosol, plastid	44.29	31.9
Bra013298.1-P	Field mustard	plastid	44.05	31.84
CDY55629	Canola	cytosol, plastid	44.05	31.73
CDX99475	Canola	plastid	43.81	31.67
CDX78842	Canola	plastid	43.81	31.67
CDY01534	Canola	cytosol, plastid	43.81	31.56
AT1G78390.1	Thale cress	cytosol, plastid	46.19	29.53
Zm00001d034075_P001	Maize	cytosol	2.38	27.78
Zm00001d008638_P001	Maize	cytosol	4.76	24.39
Zm00001d051556_P001	Maize	plastid	31.67	20.85
Zm00001d027690_P001	Maize	cytosol	3.81	20.78
Zm00001d017766_P001	Maize	plastid	31.43	20.66
Zm00001d048373_P002	Maize	cytosol, plasma membrane	25.95	19.82
Zm00001d027592_P001	Maize	mitochondrion	19.76	19.48
Zm00001d035724_P001	Maize	plastid	26.67	17.64
Zm00001d020069_P002	Maize	plastid	18.33	13.77
Zm00001d045232_P001	Maize	plastid	16.9	11.58
Zm00001d019813_P001	Maize	plastid	4.05	8.99
Zm00001d000095_P001	Maize	cytosol	3.33	8.54
KRH45171	Soybean	plastid	2.86	7.27
Zm00001d009286_P001	Maize	plastid	4.29	7.14
Zm00001d000157_P001	Maize	cytosol	1.67	6.67
CDX98457	Canola	plastid	4.76	6.35
Zm00001d033377_P001	Maize	plastid	4.29	6.34

Protein Annotations

EnsemblPlants:Zm00001d042076_P001	EnsemblPlants:Zm00001d042076_T001	EnsemblPlantsGene:Zm00001d042076	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF49	PFAM:PF03055	ProteinID:ONM34466.1	SEG:seg
UniParc:UPI000844BB8B	UniProt:A0A1D6N121	MapMan:50.1.12	:	:	:

Description

9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic

Coordinates

chr3:-:149717341..149723930

Molecular Weight (calculated)

46599.3 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.340

Length

420 amino acids

Sequence
(BLAST)

001: MKTKTHAPCE AHLPICMRPI SHGNPNPQPR HPALRPRPWL ARLHPRSWPP VPCAPAACQP PPPHPSLKYF YFTADGRKSP DVEIPVDAPT MMHDCDVSPW
101: PRQSHRDVRF SDEHLTDSGA HELTKDTRLT PFLLWLLLLH RNTTSHHSTV CDNDFAVTEN HAIIPDQQIV FKLQEMVLGG SPVVYDRNKT ARFGVLPKRA
201: TDASRLRWVD VPDCFCFHLW NAWEDEATGE IVVIGSCMTP ADAVFNESAA GEESFRSVLS EIRLDPRTGT SSRRAVLSDA DQVNLEAGMV NRQLLGRRTR
301: YAYLAIAEPW PKVSGFAKVD LEAGTVEKFI YGDGRYGGEP CFVPHLDAPA GAAEDDGYVL CYVHDEGRGA SEMLVVNARD MRAEAAVKLS GRVPYGLHGT
401: FIASKNICSL QSGTALRVDV

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.