Factsheet for Zm00001d043095_P004

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006055_P002
Zm00001d017475_P002
Zm00001d017766_P001
Zm00001d017793_P001
Zm00001d051556_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	Zm00001d006055_P002	AT1G51580.1	21798944
AT5G17790.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT5G17790.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT5G17790.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT5G17790.1	Zm00001d017766_P001	AT4G19170.1	15340011
AT5G17790.1	Zm00001d051556_P001	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01648	Sorghum	plastid	76.8	82.09
Zm00001d012529_P001	Maize	plastid	68.05	72.43
Os01t0815700-01	Rice	plastid	53.28	53.89
TraesCS3A01G339100.1	Wheat	nucleus	55.67	48.5
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	54.01	47.31
TraesCS3D01G332700.1	Wheat	plastid	53.59	46.65
TraesCS3B01G370800.2	Wheat	plastid	51.93	45.49
CDX70775	Canola	plastid	29.97	41.68
CDX78760	Canola	plastid, vacuole	30.07	41.23
Bra006420.1-P	Field mustard	plastid, vacuole	30.28	40.64
KRH64967	Soybean	plastid	34.55	40.44
CDY38459	Canola	plastid	30.07	40.36
Bra002106.1-P	Field mustard	plastid	29.55	39.66
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	35.9	39.25
KRG94930	Soybean	mitochondrion, plastid, vacuole	33.61	38.78
CDY16887	Canola	plastid	28.51	38.21
PGSC0003DMT400028376	Potato	plastid	33.51	37.05
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	32.88	36.16
AT5G17790.1	Thale cress	plastid	28.41	36.02
GSMUA_Achr7P21740_001	Banana	nucleus	36.63	31.32
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	23.0	30.74
Zm00001d013449_P001	Maize	mitochondrion	10.51	19.57
Zm00001d013432_P001	Maize	mitochondrion	10.09	18.41

Protein Annotations

EnsemblPlants:Zm00001d043095_P004	EnsemblPlants:Zm00001d043095_T004	EnsemblPlantsGene:Zm00001d043095	EntrezGene:103651081	Gene3D:4.10.1060.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	ncoils:Coil
PANTHER:PTHR23111	PANTHER:PTHR23111:SF30	PFscan:PS50199	ProteinID:ONM36988.1	ScanProsite:PS01358	SEG:seg
SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI0008459E79	UniProt:A0A1D6N8W7	MapMan:16.12.5.3	:

Description

Zinc finger protein VAR3 chloroplastic

Coordinates

chr3:-:189140826..189144567

Molecular Weight (calculated)

105008.0 Da

IEP (calculated)

8.488

GRAVY (calculated)

-0.666

Length

961 amino acids

Sequence
(BLAST)

001: MLRPPHRAVS AARLRHPIPR RPGERKRKTL FQSFCCSGTM GGTSKLLSSL LLTSSPLRLR PTTAAAAALF LTPPAAASRR LLLLSSPSPP RTLSTSSSSL
101: PHGSSQASPA PSPRAPFPEW SRLVDRLAAA GYGSGAPFAA DDLAIALASG CGLSDGALAA VSTCLAFARD RPDLLSSLPR KDVKILVANA APSLFKDGEA
201: SALRLRRYLA GEETDVCMYV IRLPLIGHIS LLLVIVSDRA ETVDIVRYLL SYTYGSSVSD SEHKKLIDSA VRNIMAELVS FSGLSQSSTF EESTPNQICS
301: SQLERFSRPP GQNIEMKRGD WICTRCSFMN FARNVRCLEC NEQRPKKMLT GGEWECPQCD FYNYGRNMSC LKCDCKRPAT IPSIPASVGS GLGGVAQLLS
401: VTSAGKSEIE RKLAESDKKA ERWLSKVSQL QDSADLSSLA EDEDFPEIMP MRKGVNKFVV SMHKTPLERR LTNAQYRSNN SPPASDPKIS QTLDRILGRS
501: TPTTAPNNQS VTSDAPTEAL KKSTDHLGGI DPVPFVPLSA DLFAKPQTNN GQSNQNGKIN AEDDSSMVNN AVPLPERQST GSLDTAEIWS EKVAEPDNAK
601: DSPSAVSDEN FPEIMPIRKG ENRFVVSKKK DRSLTSQQYK RRSILEQADS SDFVPFVPFP PGYFAKKDTP IESTTDTGIV PEGSQPKGNL NNGNWNINYN
701: KHQSQSHGAQ CRPSGAAYTG TRIMGNSQGN YNGSNGESTY HGANFEQEPY NKGYRNNNYW SSDNNNSNNA WSNNSNFNNN NDWSGNNSYN SSTENGNSSY
801: NSSHGYNYNG TWSDSNHSAW SSSSSNNNQS GSFVDNNSVT SSRSSMNDAN HVSHSSGYGG SSNRGYTGKS LEGSAVKDPD PLDMSEEAKA ERWFRRAAQI
901: KDISELANIP DEDFPEIMPM RKGVNRFVVS KRKTPLERRL TSPQYRRNLP IVRSETDEDA S

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.