Subcellular Localization
min:
: max
Winner_takes_all: plastid, vacuole
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 2
- mitochondrion 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0056g01170.t01 | Wine grape | endoplasmic reticulum, plastid | 32.55 | 26.62 |
| CDX78760 | Canola | plastid, vacuole | 25.73 | 26.39 |
| Bra006420.1-P | Field mustard | plastid, vacuole | 26.01 | 26.12 |
| CDX70775 | Canola | plastid | 25.03 | 26.05 |
| AT5G17790.1 | Thale cress | plastid | 27.12 | 25.73 |
| EES01648 | Sorghum | plastid | 31.71 | 25.36 |
| Zm00001d012529_P001 | Maize | plastid | 31.29 | 24.92 |
| Bra002106.1-P | Field mustard | plastid | 24.76 | 24.86 |
| CDY38459 | Canola | plastid | 24.76 | 24.86 |
| KRG94930 | Soybean | mitochondrion, plastid, vacuole | 28.79 | 24.85 |
| KRH64967 | Soybean | plastid | 28.23 | 24.73 |
| Os01t0815700-01 | Rice | plastid | 31.02 | 23.47 |
| Solyc01g057780.2.1 | Tomato | mitochondrion, plastid | 28.09 | 23.11 |
| GSMUA_Achr6P24110_001 | Banana | plastid | 13.63 | 23.0 |
| Zm00001d043095_P004 | Maize | mitochondrion | 30.74 | 23.0 |
| CDY16887 | Canola | plastid | 22.81 | 22.87 |
| PGSC0003DMT400028376 | Potato | plastid | 27.54 | 22.78 |
| GSMUA_Achr7P21740_001 | Banana | nucleus | 33.52 | 21.44 |
| TraesCS3B01G370800.2 | Wheat | plastid | 30.32 | 19.87 |
| HORVU3Hr1G080150.3 | Barley | mitochondrion, nucleus, plastid | 29.49 | 19.33 |
| TraesCS3A01G339100.1 | Wheat | nucleus | 29.35 | 19.13 |
| TraesCS3D01G332700.1 | Wheat | plastid | 29.21 | 19.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 9.6 | 17.78 |
| GSMUA_Achr11P... | Banana | mitochondrion | 15.99 | 14.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P02560_001 | EnsemblPlants:GSMUA_Achr7T02560_001 | EnsemblPlantsGene:GSMUA_Achr7G02560_001 | Gene3D:4.10.1060.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001876 | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | PANTHER:PTHR23111 | PANTHER:PTHR23111:SF30 |
| PFAM:PF00641 | PFscan:PS50199 | ScanProsite:PS01358 | SEG:seg | SMART:SM00547 | SUPFAM:SSF90209 |
| UniParc:UPI000294AE2F | UniProt:M0TE46 | MapMan:16.12.5.3 | : | : | : |
Description
Putative Zinc finger protein VAR3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr7G02560_001]
Coordinates
chr7:+:2028998..2037484
Molecular Weight (calculated)
78899.6 Da
IEP (calculated)
8.783
GRAVY (calculated)
-0.567
Length
719 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGVSKLHVL LAAQLPLPAA VRVARRSGAR LTVLSASSSY APRLLSSSLR SRLSFTVRGA ARTHGQAAGA GPGYIAATTS SPSSIAAHPW PEWSRLVDFL
101: LAGGYYDRRV PAAADDGDDD SLLAGEALTE EFVKAAEACL FFARDRPDLL SSLERKDIEI IVEHGSPFLF KNGSNSTRRL RSFLSGVGNN GLEIESAKTF
201: DVMRYLLSYV CNSSACKDEM YLRAKQHMET SIRSLLAAVV SVSTAGEEVR LSESTPKQSL LRQQSTRPAS QNTEMKRGDW ICPKCSFTNF ARNMRCLECN
301: DTRPKRVLTG GEWECPQCDF YNYGRNMSCL RCDCRHPGEA PQNIATTGVG LQYNRSSTIQ RNADQPSGLG RMDSSKASES SKVAELDIAS GPASTVSDDD
401: FPEIMPMRKG ENRFVISKKK DRSLTSPHYK RRIALEQANT QPPDVQSTTL SNVSKTSNAS PFGENLNEHK AGNVYDGSAV ISAGIPGNSW SDGNNNRNWE
501: PPNSTHGGDD DATAKESSQN VNEGLSPASS RKSLEGSLVK EPDPLDMSEE AKAARWFRRV AQIKDISELS NIPDEDFPEI MPMRKGVNRF VVSKRKTPLE
601: RRLTSPQYRR NLPVVNSDPE KNASEEAGKD NRLSRDLWAF SNWIWAFEGG AIGSVHHRSC IGFGVWTVEI NTRARSSVND PRRNPNRPRG VAILPRDFPR
701: PSPSAAGLAP LEVNVLKEI
101: LAGGYYDRRV PAAADDGDDD SLLAGEALTE EFVKAAEACL FFARDRPDLL SSLERKDIEI IVEHGSPFLF KNGSNSTRRL RSFLSGVGNN GLEIESAKTF
201: DVMRYLLSYV CNSSACKDEM YLRAKQHMET SIRSLLAAVV SVSTAGEEVR LSESTPKQSL LRQQSTRPAS QNTEMKRGDW ICPKCSFTNF ARNMRCLECN
301: DTRPKRVLTG GEWECPQCDF YNYGRNMSCL RCDCRHPGEA PQNIATTGVG LQYNRSSTIQ RNADQPSGLG RMDSSKASES SKVAELDIAS GPASTVSDDD
401: FPEIMPMRKG ENRFVISKKK DRSLTSPHYK RRIALEQANT QPPDVQSTTL SNVSKTSNAS PFGENLNEHK AGNVYDGSAV ISAGIPGNSW SDGNNNRNWE
501: PPNSTHGGDD DATAKESSQN VNEGLSPASS RKSLEGSLVK EPDPLDMSEE AKAARWFRRV AQIKDISELS NIPDEDFPEI MPMRKGVNRF VVSKRKTPLE
601: RRLTSPQYRR NLPVVNSDPE KNASEEAGKD NRLSRDLWAF SNWIWAFEGG AIGSVHHRSC IGFGVWTVEI NTRARSSVND PRRNPNRPRG VAILPRDFPR
701: PSPSAAGLAP LEVNVLKEI
001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
Arabidopsis Description
VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.