Factsheet for PGSC0003DMT400028376

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400004975
PGSC0003DMT400004978
PGSC0003DMT400004981
PGSC0003DMT400063189
PGSC0003DMT400069515
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	PGSC0003DMT400074198	AT1G51580.1	21798944
AT5G17790.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT5G17790.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT5G17790.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT5G17790.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT5G17790.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT5G17790.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT5G17790.1	PGSC0003DMT400004975	AT4G19170.1	15340011
AT5G17790.1	PGSC0003DMT400004978	AT4G19170.1	15340011
AT5G17790.1	PGSC0003DMT400004981	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	92.64	92.11
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	46.95	46.42
KRG94930	Soybean	mitochondrion, plastid, vacuole	43.84	45.74
KRH64967	Soybean	plastid	42.69	45.19
CDX78760	Canola	plastid, vacuole	34.87	43.22
CDY38459	Canola	plastid	35.44	43.02
CDX70775	Canola	plastid	34.18	42.98
Bra006420.1-P	Field mustard	plastid, vacuole	35.21	42.74
Bra002106.1-P	Field mustard	plastid	34.87	42.32
CDY16887	Canola	plastid	33.14	40.17
AT5G17790.1	Thale cress	plastid	32.91	37.73
EES01648	Sorghum	plastid	37.63	36.37
Zm00001d012529_P001	Maize	plastid	36.94	35.55
Os01t0815700-01	Rice	plastid	37.05	33.89
Zm00001d043095_P004	Maize	mitochondrion	37.05	33.51
TraesCS3A01G339100.1	Wheat	nucleus	38.78	30.55
TraesCS3D01G332700.1	Wheat	plastid	38.2	30.07
TraesCS3B01G370800.2	Wheat	plastid	37.17	29.44
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	37.05	29.35
GSMUA_Achr7P21740_001	Banana	nucleus	37.05	28.65
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	22.78	27.54
PGSC0003DMT400014472	Potato	plastid	10.82	23.1
PGSC0003DMT400064951	Potato	mitochondrion, nucleus	9.9	17.92
PGSC0003DMT400063483	Potato	mitochondrion, plastid	11.05	12.39

Protein Annotations

EntrezGene:102587958	MapMan:16.12.5.3	Gene3D:4.10.1060.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0046872	GO:GO:1900871	InterPro:IPR001876	UniProt:M1AR14	PFAM:PF00641	EnsemblPlantsGene:PGSC0003DMG400010935
PGSC:PGSC0003DMG400010935	EnsemblPlants:PGSC0003DMT400028376	ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR23111	PANTHER:PTHR23111:SF30
SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI000296D315	RefSeq:XP_006337986.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf
SEG:seg	:	:	:	:	:

Description

Zinc finger protein VAR3, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400010935]

Coordinates

chr1:+:35672578..35679234

Molecular Weight (calculated)

97841.6 Da

IEP (calculated)

7.367

GRAVY (calculated)

-0.733

Length

869 amino acids

Sequence
(BLAST)

001: MASRFISLLA TPFPTFLNHL RRPSFLHLRR LACGFRRFTV YSHSHISPLS PSQQQFHAQP INNNTPLDSS SSFTSHPWPE WRSLITLLTG NDQLPPAVED
101: SFVAYEDLSQ DFLRAATLCL DFAQERPNFI GLLSRRDIEA VVSNGTPFLF KGALETARRM RAFLGIDGST VLDHDNANTV DLMKYILSYA SKPTVSSEKN
201: SLYSRELIES SCRNLLRELV EVSCGAPAVN LPPAEQYDFS GRYGQTSRPI RQNIVMKRGD WICQKCNFMN FARNNKCLEC EEPRPRRQLT GREWECPQCY
301: FFNYGRNVVC LRCDFGRPAG ASPRTTHSSA EDGYNGNSAY PNGIDLKLAE NEEKAQRWFS KISQMNNASD MDSAAADEDF PEIMPPRKGE NKFVVSTRKT
401: PLERRLANTR YERNFGYNGI PEGNTLTGGA HSILDTSMKQ NIDQMSGKSH KGIAADKNSE SAIHHSGRGS NYVPFVPLPK GMFQKNNPTS VMDEKVKEEV
501: GVSHTPEVSH QTCSASLGND FGKSMEKLQS NDPLSEDKER EQAEKSESWF KKIAELHDVK DLPSSISDDD FPEIMPMRKG ENRFVVSKKK DRSLTSPMYK
601: RQVAMEQANN SSFVPFVPFP PGYFAKMDTQ QEHITDSSSL SRVGTSSTFS NSDHKGSPMN PLSKTYCEKE DVEKTHQQSD DPGFLFRDTI TAQTPVDQFT
701: NSRFASPNFS RDEGVPCVGN SVEASLALDA CNTDSKDRRN SVNEDVSPAE TLGVGSTKLP RNQNVRNGWT GKSLEGSAVK ETDPLDMSEE AKAERWFQRV
801: AQIKDISELS QIPDEDFPSI MPMRKGVNRF VVSKRKTPLE RRLTSTQYRR NLPVVTSDPM KRERDNSDK

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.