Factsheet for PGSC0003DMT400004981

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000764
PGSC0003DMT400028376

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	PGSC0003DMT400028376	AT5G17790.1	15340011
AT4G19170.1	PGSC0003DMT400000764	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075490.2.1	Tomato	plastid	95.6	95.12
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	33.33	82.08
PGSC0003DMT400004975	Potato	plastid	47.21	81.58
Bra013378.1-P	Field mustard	peroxisome	61.25	71.83
VIT_02s0087g00910.t01	Wine grape	plastid	71.07	70.12
PGSC0003DMT400047548	Potato	cytosol	42.64	66.32
CDX99397	Canola	plastid	65.31	65.09
CDX78923	Canola	plastid	65.31	64.77
AT4G19170.1	Thale cress	plastid	65.14	64.71
KRH76475	Soybean	plastid	64.13	64.24
PGSC0003DMT400047553	Potato	plastid	61.76	63.48
CDX76489	Canola	plastid	56.85	63.16
Bra020970.1-P	Field mustard	plastid	60.24	62.79
TraesCS6A01G271600.1	Wheat	plastid	58.38	53.99
KXG30924	Sorghum	plastid	58.04	53.85
Zm00001d051556_P001	Maize	plastid	58.04	53.76
TraesCS6D01G251800.1	Wheat	plastid	58.04	53.68
TraesCS6B01G298800.1	Wheat	plastid	58.38	53.65
HORVU6Hr1G068720.1	Barley	plastid	58.04	53.34
Zm00001d017766_P001	Maize	plastid	57.36	53.05
Os02t0704000-01	Rice	plastid	56.01	51.88
Os12t0435200-01	Rice	plastid	49.58	50.87
GSMUA_Achr4P19020_001	Banana	plastid	39.76	44.68
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	33.5	39.13
PGSC0003DMT400049305	Potato	cytosol	32.49	37.72
PGSC0003DMT400039054	Potato	plastid	32.66	33.28
PGSC0003DMT400011015	Potato	plastid	23.35	22.51
PGSC0003DMT400011006	Potato	cytosol	22.67	22.08

Protein Annotations

EntrezGene:102581808	MapMan:9.1.6.3.2	ProteinID:ABA55735	ProteinID:ABA55735.1	InterPro:Carotenoid_Oase	EMBL:DQ206633
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702
GO:GO:0046872	GO:GO:0055114	UniProt:M0ZPA4	PFAM:PF03055	EnsemblPlantsGene:PGSC0003DMG400001969	PGSC:PGSC0003DMG400001969
EnsemblPlants:PGSC0003DMT400004981	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	UniParc:UPI00029627AE	RefSeq:XP_006359966.1	SEG:seg

Description

Carotenoid cleavage dioxygenase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400001969]

Coordinates

chr8:-:47375775..47378534

Molecular Weight (calculated)

65241.0 Da

IEP (calculated)

6.455

GRAVY (calculated)

-0.223

Length

591 amino acids

Sequence
(BLAST)

001: MDALSSTFLS TLSQHPKSLL SPNNNNYYYY SPTLKVFSVR IEERPQTTTT ITKPQEKSTP SPPKPTPKRE PIPSRKPIEP SFPSFIFNAF DDFVNTFIDP
101: PRKSSVDPRY VLSNNFAPVD ELPPTECEVV EGSLPSCLDG AYIRNGPNPQ YLPRGPYHLF DGDGMLHSIK ISQGKAMFCS RFVKTYKYNI ENEAGSPIIP
201: NVFSGFNGLT ASAARGALTA ARAIAGQFNP ANGIGLANTS LALFGGKLFA LGESDLPYEV KIAPDGDVFT LGRHDFNGNL FMSMTAHPKI DPETNEAFAF
301: RYGPMPPFLN YFRVDPNGIK TPDVPIFSMT RPSFLHDFAI TKKYAIFSDI QIGMNPIELL TGGSPVGTDS GKIPRIGVIP RYAKDESEMR WFDVPGFNIV
401: HAINAWDEDG GDTIVLIAPN ILSVEHTLER MDMIHASVEK VKINLKTGMV SRHPISTRNL DFGVINPAYV GKKNKYVYAA IGDPMPKVIG IAKLDVSVAE
501: VDRRDCIVAC RIFGEGCYGG EPFFVPKNPS IDEDDGYVVS YVHNEKTGES NFLVMDATSP NLDIVAHVKL PRRVPYGFHG LFVTENDLMK L

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.