Factsheet for HORVU6Hr1G068720.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022440.1
HORVU0Hr1G035820.1
HORVU3Hr1G080150.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	HORVU3Hr1G080150.3	AT5G17790.1	15340011
AT4G19170.1	HORVU0Hr1G022440.1	AT5G56760.1	21798944
AT4G19170.1	HORVU0Hr1G035820.1	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G298800.1	Wheat	plastid	97.2	97.2
TraesCS6A01G271600.1	Wheat	plastid	96.11	96.71
TraesCS6D01G251800.1	Wheat	plastid	95.65	96.24
Os02t0704000-01	Rice	plastid	78.23	78.84
KXG30924	Sorghum	plastid	77.92	78.65
Zm00001d051556_P001	Maize	plastid	76.98	77.59
Zm00001d017766_P001	Maize	plastid	76.67	77.15
Bra013378.1-P	Field mustard	peroxisome	52.1	66.47
CDX78923	Canola	plastid	54.28	58.56
AT4G19170.1	Thale cress	plastid	54.12	58.49
CDX99397	Canola	plastid	53.81	58.35
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	21.77	58.33
PGSC0003DMT400004981	Potato	plastid	53.34	58.04
VIT_02s0087g00910.t01	Wine grape	plastid	53.81	57.76
CDX76489	Canola	plastid	47.74	57.71
VIT_02s0087g00930.t01	Wine grape	plastid	52.41	57.22
Bra020970.1-P	Field mustard	plastid	50.39	57.14
KRH76475	Soybean	plastid	52.41	57.12
Solyc08g075490.2.1	Tomato	plastid	52.57	56.9
PGSC0003DMT400047548	Potato	cytosol	32.66	55.26
Solyc08g075480.2.1	Tomato	plastid	49.46	55.11
PGSC0003DMT400047553	Potato	plastid	47.28	52.87
VIT_16s0039g01370.t01	Wine grape	plastid	43.39	50.0
PGSC0003DMT400004975	Potato	plastid	26.59	50.0
GSMUA_Achr4P19020_001	Banana	plastid	40.59	49.62
HORVU5Hr1G008050.1	Barley	plastid	34.06	36.08
HORVU5Hr1G054970.1	Barley	cytosol	33.75	35.69
HORVU5Hr1G092850.2	Barley	plastid	34.99	34.94
HORVU5Hr1G044510.1	Barley	cytosol	31.57	33.83
HORVU5Hr1G000320.9	Barley	plastid	29.55	33.51
HORVU4Hr1G006300.1	Barley	cytosol	28.15	32.61
HORVU3Hr1G108100.2	Barley	plasma membrane, plastid	23.79	25.67
HORVU1Hr1G000550.2	Barley	cytosol	22.24	24.4
HORVU5Hr1G055740.1	Barley	plasma membrane	23.33	23.33

Protein Annotations

MapMan:9.1.6.3.2	InterPro:Carotenoid_Oase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0010287	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:HORVU6Hr1G068720
EnsemblPlants:HORVU6Hr1G068720.1	UniProt:M0XN17	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	UniParc:UPI0002959968
SEG:seg	:	:	:	:	:

Description

Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0XN17]

Coordinates

chrchr6H:-:476864535..476870164

Molecular Weight (calculated)

69178.4 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.201

Length

643 amino acids

Sequence
(BLAST)

001: MEGALVTSNF SMADLYPAKA NAAHAPRSRR LSYISPAASS AAAPNPSYRR KKSTSPPPPS AAATATVLTS PPKPVEQQET EEHLVDRSVN NATGTRVATA
101: RASRASAAPR QAPRSSRPRR RPSTSLQAAF CNALEEAINT FVDPPVLRPS VDPRHVLSAN FAPVDELPPT PCPVVRGVIP RCLAGGAYIR NGPNPQHLPR
201: GPHHLFDGDG MLHSLLLPTT PGSDPVLCSR YVQTYKYLVE RDAGEPVLPN VFSGFHGLAG MARGAVTAAR VLTGQMNPME GVGLANTSLA VFGGRLYALG
301: ESDLPYAVRV DPATGEVTTL GRCDFGGRLS MGMTAHPKKD PITGELFAFR YGPMPPFVTY FRFDPAGNKG ADVPIFSVKQ PSFLHDFAVT EHYAIFPEIQ
401: IVMNPMGMVV GGGSPVGADP GMVPRLGVIP KYAADESEMR WFEVPGFNMM HSVNAWEEAG GQEIVMVAPN ILSIEHTLER MELIHASVEL VRINLRTGNV
501: TRTPLAAANL DFGVINPACL GRRNRYGYFG VGDPMPKIGG VAKLDFDRAG HGDCTVARRD FGPGCFAGEP FFVSDDVEGN GDEDDGYVVC YVHDEGTGDN
601: RFVVMDAQSP DLDIVAEVQL PSRVPYGFHG LFVRQAELRS QHQ

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.