Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G055740.1 | Barley | plasma membrane | 79.69 | 72.63 |
| OQU89281 | Sorghum | cytosol | 58.53 | 69.29 |
| OQU89285 | Sorghum | plastid | 68.26 | 65.47 |
| Os09t0321200-00 | Rice | plastid | 63.65 | 65.44 |
| Zm00001d020069_P002 | Maize | plastid | 57.85 | 60.64 |
| HORVU3Hr1G108100.2 | Barley | plasma membrane, plastid | 53.58 | 52.68 |
| HORVU4Hr1G006300.1 | Barley | cytosol | 26.28 | 27.75 |
| HORVU5Hr1G000320.9 | Barley | plastid | 25.6 | 26.45 |
| HORVU5Hr1G054970.1 | Barley | cytosol | 26.62 | 25.66 |
| HORVU5Hr1G008050.1 | Barley | plastid | 26.11 | 25.21 |
| HORVU5Hr1G092850.2 | Barley | plastid | 26.96 | 24.53 |
| HORVU5Hr1G044510.1 | Barley | cytosol | 24.4 | 23.83 |
| HORVU6Hr1G068720.1 | Barley | plastid | 24.4 | 22.24 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G000550.2 | EnsemblPlantsGene:HORVU1Hr1G000550 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 |
| PANTHER:PTHR10543:SF30 | PFAM:PF03055 | SEG:seg | UniParc:UPI000B468CCA | UniProt:A0A287EEW4 | MapMan:50.1.12 |
Description
No Description!
Coordinates
chrchr1H:-:1506010..1510426
Molecular Weight (calculated)
65306.5 Da
IEP (calculated)
5.874
GRAVY (calculated)
-0.295
Length
586 amino acids
Sequence
(BLAST)
(BLAST)
001: NNGRCFVPFL LQKSLIQQLQ SQLSIKIDEA SHVMKKVPQI LLDAIVDSAF KFTDQALHSS ESNFAPVDEI GGSIEILQLE GNIPEDFPEG VYIRNGSNPL
101: FGALQSTASI FGESNDIWVE GEGMLHALYF TKKNSASWSV SYANGYVQSE TLKIERDRQK PCFLPAAQGD SAAVISAYIL NYLRFGKVNK NISNTNVFEH
201: AGRVYAVAES HQPQEICIQN LETGNTWDIH EQWNRPCTSH PKVAPESREL VIFGSDAKKP FLVVGVISDD GTKLKHKVDL KLDRPTLCHD IGVTIRYNII
301: MDLPLTVDIG RLTTGGQLIE FEKEGYARIG VMPRYGDAES VVWFDVEPCC MFHLINCFEE GDEVVVQGLC SADSVIPGPR LSKSDILPEK SQLTGDGKTT
401: KQRINEKLFS RLYEWRLNQE TKTITGEYLT GRECSLELPM INNHYTGLHH SYAYAQIVDS VTRSGEGCGK VLPKYGGFAK LCLDERGTGT ETSTKDLIKM
501: EIHRLGEDQF CSGASFVPRV CGSHEDDGWI ISFVHDEVTN TSQVHIIDTQ RFEGAPVAKI TLPHRVPYGF HGTFVHSKIT EHANNK
101: FGALQSTASI FGESNDIWVE GEGMLHALYF TKKNSASWSV SYANGYVQSE TLKIERDRQK PCFLPAAQGD SAAVISAYIL NYLRFGKVNK NISNTNVFEH
201: AGRVYAVAES HQPQEICIQN LETGNTWDIH EQWNRPCTSH PKVAPESREL VIFGSDAKKP FLVVGVISDD GTKLKHKVDL KLDRPTLCHD IGVTIRYNII
301: MDLPLTVDIG RLTTGGQLIE FEKEGYARIG VMPRYGDAES VVWFDVEPCC MFHLINCFEE GDEVVVQGLC SADSVIPGPR LSKSDILPEK SQLTGDGKTT
401: KQRINEKLFS RLYEWRLNQE TKTITGEYLT GRECSLELPM INNHYTGLHH SYAYAQIVDS VTRSGEGCGK VLPKYGGFAK LCLDERGTGT ETSTKDLIKM
501: EIHRLGEDQF CSGASFVPRV CGSHEDDGWI ISFVHDEVTN TSQVHIIDTQ RFEGAPVAKI TLPHRVPYGF HGTFVHSKIT EHANNK
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.