Factsheet for HORVU4Hr1G006300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G002800.1	Wheat	cytosol	92.43	93.1
TraesCS5B01G001800.1	Wheat	cytosol	90.27	92.78
TraesCS5A01G002400.1	Wheat	cytosol	93.69	92.36
TraesCS5A01G002200.1	Wheat	cytosol	82.7	86.77
Os12t0640600-01	Rice	plasma membrane	81.62	83.89
OQU93261	Sorghum	cytosol	81.08	82.72
Zm00001d048373_P002	Maize	cytosol, plasma membrane	81.8	82.55
HORVU5Hr1G000320.9	Barley	plastid	83.96	82.19
TraesCS5D01G002900.1	Wheat	plastid	87.75	79.32
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	74.23	75.32
VIT_13s0064g00810.t01	Wine grape	cytosol	67.93	73.92
CDX93902	Canola	cytosol	69.55	73.52
CDY53711	Canola	cytosol	69.55	73.52
AT3G63520.1	Thale cress	cytosol	70.45	72.68
Zm00001d034075_P001	Maize	cytosol	4.68	72.22
VIT_13s0064g00840.t01	Wine grape	extracellular	70.81	71.98
Solyc01g087250.2.1	Tomato	cytosol, plastid	70.63	71.93
CDY34746	Canola	cytosol	16.22	70.31
CDY34748	Canola	endoplasmic reticulum, extracellular	60.9	69.98
Solyc01g087260.2.1	Tomato	plastid	68.65	69.91
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	66.31	68.15
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	68.65	66.38
Bra040449.1-P	Field mustard	cytosol	65.41	66.36
Bra007826.1-P	Field mustard	plastid	65.77	60.93
CDX76782	Canola	mitochondrion	65.95	59.8
CDX76783	Canola	plastid	65.23	59.25
Bra007825.1-P	Field mustard	plastid	56.76	54.78
CDY34747	Canola	cytosol	13.15	54.07
HORVU5Hr1G054970.1	Barley	cytosol	34.95	31.91
HORVU5Hr1G008050.1	Barley	plastid	34.41	31.47
HORVU5Hr1G092850.2	Barley	plastid	35.32	30.43
HORVU5Hr1G044510.1	Barley	cytosol	32.61	30.17
HORVU6Hr1G068720.1	Barley	plastid	32.61	28.15
HORVU1Hr1G000550.2	Barley	cytosol	27.75	26.28
HORVU3Hr1G108100.2	Barley	plasma membrane, plastid	27.39	25.5
HORVU5Hr1G055740.1	Barley	plasma membrane	28.83	24.88

Protein Annotations

EnsemblPlants:HORVU4Hr1G006300.1	EnsemblPlantsGene:HORVU4Hr1G006300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF37	PFAM:PF03055	UniParc:UPI000B47BF37	UniProt:A0A287N220	MapMan:9.1.6.3.1	:

Description

No Description!

Coordinates

chrchr4H:+:14973852..14978888

Molecular Weight (calculated)

62734.3 Da

IEP (calculated)

6.106

GRAVY (calculated)

-0.345

Length

555 amino acids

Sequence
(BLAST)

001: MGEAAAAMED AQRKGLAVVV PAPRPRKGVA SWAVDMLERL AVRLSHGKKA EPVPWLSGNF APVPDETPPA AGLTVRGHLP KCLNGEFVRV GPNPKFTPIA
101: GYHWFDGDGM IHAMRIKDGK ATYISRYVKT SRLEQEEYFG GPKFTKIGDL KGVLGLFMVL TQELRKKLKV LDATYGIGTA NTALIYHHGK LMALSESDKP
201: YVIKILEDGD LQTLGLLDYD KRLKHPFTAH PKVDPFTDEM FTFGYSHEPP YCTYRVITKD GIMLDPVPIT IPESVMMHDF AITENYSIFM DLPMFFRPKE
301: MVKNSEFIYK FDPTKKARFG ILQRYEKDEK NIRWFELPNC FIFHNANAWE EGDEVILITC RLNNLDLDQV NGNQSDKLED PGNELYEMRF NMKTGDASQK
401: QLSVSAIDFP RINESYTGRK QQYIYCTILD STVKVSGILK MTGIIKFDLH AEPESSKEQL EVGGNVRGIY YLGPSRFCSE AVFVPKEPGV SHEEDDGYLI
501: FFVHDENTGK SEVNVIDAKT MSGDPVAVIE LPNRVPYGFH AFFVNEEQLG HQVER

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.