CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, extracellular
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 25724908
endoplasmic reticulum: 27224218

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	88.33	93.89
VIT_13s0064g00810.t01	Wine grape	cytosol	74.22	83.53
VIT_13s0064g00840.t01	Wine grape	extracellular	77.53	81.5
Solyc01g087250.2.1	Tomato	cytosol, plastid	75.44	79.45
CDY53711	Canola	cytosol	72.65	79.43
CDX93902	Canola	cytosol	72.47	79.24
AT3G63520.1	Thale cress	cytosol	73.69	78.62
CDY34746	Canola	cytosol	17.42	78.12
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	73.34	76.97
TraesCS5D01G001900.1	Wheat	cytosol, golgi	71.95	75.23
Zm00001d034075_P001	Maize	cytosol	4.7	75.0
TraesCS5A01G001500.2	Wheat	cytosol	71.43	74.82
Solyc01g087260.2.1	Tomato	plastid	70.91	74.68
OQU93261	Sorghum	cytosol	70.56	74.45
Zm00001d048373_P002	Maize	cytosol, plasma membrane	71.25	74.36
CDY34748	Canola	endoplasmic reticulum, extracellular	62.54	74.33
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	70.91	74.27
Os12t0640600-01	Rice	plasma membrane	68.99	73.33
Bra040449.1-P	Field mustard	cytosol	69.86	73.31
HORVU5Hr1G000320.9	Barley	plastid	71.25	72.13
TraesCS5D01G002800.1	Wheat	cytosol	66.9	69.69
TraesCS5B01G001800.1	Wheat	cytosol	65.33	69.44
HORVU4Hr1G006300.1	Barley	cytosol	66.38	68.65
TraesCS5A01G002400.1	Wheat	cytosol	67.07	68.38
TraesCS5A01G002200.1	Wheat	cytosol	62.54	67.86
Bra007826.1-P	Field mustard	plastid	68.82	65.94
CDX76782	Canola	mitochondrion	68.82	64.54
CDX76783	Canola	plastid	67.94	63.83
TraesCS5D01G002900.1	Wheat	plastid	65.68	61.4
Bra007825.1-P	Field mustard	plastid	60.63	60.52
CDY34747	Canola	cytosol	13.94	59.26
KRH42549	Soybean	plastid	33.97	33.11
KRH76475	Soybean	plastid	33.97	33.05
KRH58642	Soybean	plastid	33.45	32.65
KRH43866	Soybean	plastid	24.04	30.07
KRH52732	Soybean	plastid	28.75	28.4
KRH62062	Soybean	cytosol, plastid	27.7	27.46
KRH52736	Soybean	mitochondrion, plastid	28.05	27.43
KRH62063	Soybean	cytosol	21.25	25.26
KRH13600	Soybean	plastid	22.47	22.43
KRH45171	Soybean	plastid	6.45	22.42

Protein Annotations

EntrezGene:100789210	MapMan:9.1.6.3.1	EMBL:ACUP02008311	InterPro:Carotenoid_Oase	EnsemblPlantsGene:GLYMA_13G202200	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	UniProt:I1M0X0	EnsemblPlants:KRH20815
ProteinID:KRH20815	ProteinID:KRH20815.1	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	TMHMM:TMhelix
UniParc:UPI000234A129	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:31589829..31596326

Molecular Weight (calculated)

64540.6 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.188

Length

574 amino acids

Sequence
(BLAST)

001: MGDDGKKISG EGGLVKVEPK PSNGFTSKVV DLLEKLVVKF LYDSSLPHHY LTGNFAPVSE TPPTKDLPVK GYLPDCLNGE FVRVGPNPKF APVAGYHWFD
101: GDGMIHGLRI KDGKATYVSR FVRTSRLKQE EYFGGSKFMK IGDLKGLFGL LMVNIHMLRT KWKVLDASYG TGTANTALVY HHGKLLALSE ADKPYAIKVF
201: EDGDLQTLGM LDYDKRLGHS FTAHPKVDPF TGEMFTFGYA HTPPYITYRV ISKDGYMHDP VPITVSDPIM MHDFAITENY AIFLDLPLIF RPKEMVKNKT
301: LIFSFDSTKK ARFGVLPRYA KDEKLIRWFE LPNCFIFHNA NAWEEEDEVV LITCRLQNPN LDLVGGTAKE KLENFSNELY EMRFNMKTGE ASQKKLSASA
401: VDFPRVNESY TGRKQRYVYG TTLDSIAKVT GIIKFDLHAE PDNGKTKLEV GGNVQGLYDL GPGKYGSEAV YVPRVPGTDS EEDDGYLICF VHDENTGKSF
501: VHVINAKTMS ADPVAVVELP HRVPYGFHAF FVTEVCVTTT FIYSYIAFLP LFLSSTLLAK LQCLFSNHFL RVIW

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.