CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52732	Soybean	plastid	94.13	93.8
KRH52736	Soybean	mitochondrion, plastid	65.98	65.08
KRH62063	Soybean	cytosol	51.81	62.11
VIT_11s0016g02740.t01	Wine grape	cytosol	19.0	58.82
VIT_04s0008g03510.t01	Wine grape	cytosol	53.89	55.03
Solyc08g066720.1.1	Tomato	cytosol	38.17	53.38
PGSC0003DMT400011006	Potato	cytosol	52.85	50.41
PGSC0003DMT400011015	Potato	plastid	53.2	50.24
VIT_04s0008g03480.t01	Wine grape	cytosol	57.69	48.06
KXG19379	Sorghum	mitochondrion, plastid	42.66	41.51
Os06t0162550-00	Rice	mitochondrion, plastid	40.76	41.26
Zm00001d045232_P001	Maize	plastid	42.14	39.8
VIT_04s0008g03450.t01	Wine grape	plastid	27.46	36.81
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	27.46	27.7
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	25.73	27.59
KRH58642	Soybean	plastid	25.91	25.51
KRH42549	Soybean	plastid	25.39	24.96
KRH76475	Soybean	plastid	25.04	24.58
KRH43866	Soybean	plastid	17.27	21.79
KRH45171	Soybean	plastid	5.18	18.18
KRH13600	Soybean	plastid	16.75	16.87

Protein Annotations

EMBL:ACUP02002216	EnsemblPlants:KRH62062	EnsemblPlantsGene:GLYMA_04G083500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF30	PFAM:PF03055	ProteinID:KRH62062	ProteinID:KRH62062.1	UniParc:UPI000295EA36
UniProt:K7KIW6	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:7038248..7044239

Molecular Weight (calculated)

64969.7 Da

IEP (calculated)

6.047

GRAVY (calculated)

-0.206

Length

579 amino acids

Sequence
(BLAST)

001: METHMALAAS YMTLAPKYCC VQKRPFIITS GLSSAFKPIL RALPQIPLQI DASKTFTDIK SKFLNAVVDS AFEFVDQLVL PSQSNFAPVE ELGEAVAITN
101: IEGDIPDHFP EGVFIRNGPN PLFGGLKSSK SILGRTNSVW VEGEGMLHAL YFKRESDGCY TIVYNNRYVE TETYKLEKQS AKPLFLPAVK GDSLAVLSSM
201: LLNGLRFGQL NKDYSNTNVF EHSGKFYSVS ENHMPQEIDI YTLSTLKYWD VNGACNRPFA SHPKKVPGTG ELVIFGVDAT KPYLEIGIVS ADGKELVHKE
301: DIKLDRCSLC HDIGITSRYI AILDLPLIVD SNRLLKRGPL IKYEKEKYAR IGIMPLYGDE KSTQWFEVEP NSTFHIINSF EDGHEVVLWG CRALDSIIPG
401: PEDGLNESTM FSRCYEWRLN IKSGEVKEKY ITGPEQFMDF PVINASFTGI KNRYGYTQVV DPAASYAADI PKYGALAKLY FREPCSEFPK GDTQQKPIRV
501: EYHRFERNVF CTGSAFVPKE GGIEEDDGWI ITFVHNEDTG ISQVHIIETK KFSGEAVAKI TMPFRVPYGF HGAFMPLSL

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.