CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94930
KRH64967

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	KRG94930	AT5G17790.1	15340011
AT1G30100.1	KRH64967	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58642	Soybean	plastid	89.3	89.46
Bra012603.1-P	Field mustard	cytosol	50.93	67.87
PGSC0003DMT400039054	Potato	plastid	65.03	66.03
Solyc08g016720.1.1	Tomato	plastid	64.52	65.4
VIT_10s0003g03750.t01	Wine grape	plastid	66.72	64.96
Bra032359.1-P	Field mustard	plastid	61.97	62.07
AT1G30100.1	Thale cress	plastid	61.97	61.97
CDY26294	Canola	plastid	61.8	61.8
CDY61838	Canola	plastid	61.8	61.8
CDY01534	Canola	cytosol, plastid	60.61	61.23
CDY55629	Canola	cytosol, plastid	60.27	60.89
AT4G18350.1	Thale cress	cytosol, plastid	60.1	60.72
Bra013298.1-P	Field mustard	plastid	59.59	60.41
CDX99475	Canola	plastid	59.25	60.07
CDX78842	Canola	plastid	59.25	60.07
KRH43866	Soybean	plastid	43.63	55.99
KRH45171	Soybean	plastid	13.24	47.27
KRH13600	Soybean	plastid	41.43	42.43
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	33.11	33.97
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	31.07	33.89
KRH76475	Soybean	plastid	31.58	31.53
KRH52736	Soybean	mitochondrion, plastid	26.15	26.24
KRH52732	Soybean	plastid	25.3	25.65
KRH62063	Soybean	cytosol	20.88	25.47
KRH62062	Soybean	cytosol, plastid	24.96	25.39

Protein Annotations

EMBL:ACUP02004813	EnsemblPlants:KRH42549	EnsemblPlantsGene:GLYMA_08G096200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	ProteinID:KRH42549	ProteinID:KRH42549.1
SEG:seg	UniParc:UPI0002953B38	UniProt:I1KRU0	MapMan:11.1.1.4	:	:

Description

hypothetical protein

Coordinates

chr8:+:7365818..7368467

Molecular Weight (calculated)

65936.8 Da

IEP (calculated)

7.203

GRAVY (calculated)

-0.343

Length

589 amino acids

Sequence
(BLAST)

001: MIMAALNSST CAKPQFPHPL SSSFSSSSSL TRDLGFPTRF QKKPIRKVVD CALHSPPVIH FPNQPYNKPE ITKEPTTSTA ERPQWNPFQK AAAKALDMFE
101: SALLSRELNQ PFPKTTDPRV QIAGNFAPVP EHPVEHSLPV IGTIPDAING VYLRNGANPL FKPKAGHHLF DGDGMVHAVK FNDGTASYAC RFTETQRLMQ
201: ERKLGKPVFP KAIGELHGHS GIARLMLFYA RGLCGIVDHR RGAGAANAGL VFFNGKLLAM SEDDFPYELR ITASGDLETI GRYSFHGQLN SSMIAHPKVD
301: PVSGELFTLS YDVTSKILKY FHFSPEDERK SPDIEIPLDA PTMTHDFAIT ENFVVIPDQQ VVFKLGEMIK GGSPVIYDGE KKSRFGILPK YASDASSIVW
401: VDSPDTFFFH FWNAWEERDK DEVVVIGSCM TPPDSIFNDR EERLKSVLTE VRLNMRSGKA RRRVLVEEMN LEAGMVNRKR LGRKTRFAYL CIAEPWPKVS
501: GVAKVDLESG EVKRHEYGER RFGGEPFFLP TRGGNGNEDE GYVMAFVHDE MTWQSELQIL NALDLKLEAT VMLPSRVPYG FHGTFVEAH

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.