Factsheet for VIT_10s0003g03750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g01170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	VIT_08s0056g01170.t01	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039054	Potato	plastid	74.05	77.24
Solyc08g016720.1.1	Tomato	plastid	73.55	76.59
VIT_19s0093g00550.t01	Wine grape	plastid	75.04	74.55
Bra012603.1-P	Field mustard	cytosol	52.4	71.72
Zm00001d027690_P001	Maize	cytosol	8.93	70.13
Bra032359.1-P	Field mustard	plastid	67.93	69.9
CDY26294	Canola	plastid	67.77	69.61
Zm00001d008638_P001	Maize	cytosol	9.42	69.51
CDY61838	Canola	plastid	67.6	69.44
AT1G30100.1	Thale cress	plastid	67.44	69.27
Zm00001d023690_P001	Maize	cytosol	14.71	67.94
KRH58642	Soybean	plastid	65.79	67.69
KRH42549	Soybean	plastid	64.96	66.72
GSMUA_Achr4P22870_001	Banana	plastid	65.79	66.22
GSMUA_Achr5P02570_001	Banana	plastid	66.28	65.74
Os12t0617400-01	Rice	cytosol	30.58	65.37
GSMUA_Achr6P31180_001	Banana	plastid	64.79	65.01
GSMUA_Achr2P12950_001	Banana	plastid	63.14	64.86
GSMUA_Achr4P31460_001	Banana	plastid	64.63	64.84
AT4G18350.1	Thale cress	cytosol, plastid	62.48	64.84
CDY55629	Canola	cytosol, plastid	62.31	64.67
CDY01534	Canola	cytosol, plastid	62.15	64.49
GSMUA_Achr7P01250_001	Banana	plastid	64.13	64.34
Bra013298.1-P	Field mustard	plastid	61.32	63.86
CDX99475	Canola	plastid	61.16	63.68
CDX78842	Canola	plastid	60.66	63.17
Zm00001d031086_P001	Maize	plastid	59.17	62.92
TraesCS5D01G383500.1	Wheat	plastid	61.32	62.35
TraesCS5B01G375900.1	Wheat	plastid	61.32	62.35
TraesCS5A01G374000.1	Wheat	plastid	60.83	62.27
Zm00001d000095_P001	Maize	cytosol	16.86	62.2
OQU88453	Sorghum	plastid	58.84	62.13
Os03t0645900-00	Rice	plastid	62.31	62.01
Zm00001d018819_P001	Maize	plastid	58.51	61.78
Zm00001d007876_P001	Maize	plastid	58.35	61.39
Zm00001d033222_P001	Maize	extracellular	60.83	60.93
HORVU5Hr1G008050.1	Barley	plastid	60.99	60.79
EER93751	Sorghum	plastid	61.32	60.72
Zm00001d013689_P001	Maize	plastid	60.0	60.4
TraesCS2D01G251600.1	Wheat	plastid	58.02	60.31
TraesCS5B01G029300.1	Wheat	plastid	61.16	60.26
Os07t0154100-01	Rice	plastid	57.85	60.14
TraesCS5D01G038800.1	Wheat	plastid	60.83	59.84
Zm00001d041319_P001	Maize	plastid	59.67	59.77
HORVU5Hr1G054970.1	Barley	cytosol	59.5	59.21
Zm00001d000157_P001	Maize	cytosol	10.25	59.05
TraesCS2B01G268400.1	Wheat	plastid	57.69	58.56
TraesCS2A01G250600.1	Wheat	plastid	57.36	58.52
HORVU5Hr1G092850.2	Barley	plastid	61.32	57.61
HORVU5Hr1G044510.1	Barley	cytosol	56.86	57.33
VIT_05s0051g00670.t01	Wine grape	plastid	53.06	55.83
Zm00001d023458_P001	Maize	cytosol	11.9	51.06
Zm00001d042076_P001	Maize	cytosol, plastid	33.06	47.62
Zm00001d022623_P001	Maize	cytosol	26.61	43.16
VIT_13s0064g00810.t01	Wine grape	cytosol	32.89	39.02
Zm00001d035724_P001	Maize	plastid	40.0	38.11
VIT_13s0064g00840.t01	Wine grape	extracellular	33.88	37.55
Zm00001d019813_P001	Maize	plastid	11.24	35.98
VIT_02s0087g00930.t01	Wine grape	plastid	34.21	35.14
VIT_02s0087g00910.t01	Wine grape	plastid	32.89	33.22
VIT_16s0039g01370.t01	Wine grape	plastid	30.25	32.8
Zm00001d009286_P001	Maize	plastid	12.73	30.56
Zm00001d033377_P001	Maize	plastid	13.06	27.82
Zm00001d027592_P001	Maize	mitochondrion	19.5	27.7
VIT_04s0008g03510.t01	Wine grape	cytosol	23.31	24.87
VIT_11s0016g02740.t01	Wine grape	cytosol	6.61	21.39
VIT_04s0008g03480.t01	Wine grape	cytosol	23.64	20.58
VIT_04s0008g03450.t01	Wine grape	plastid	12.4	17.36

Protein Annotations

EntrezGene:100232943	wikigene:100232943	MapMan:11.1.1.4	ProteinID:AAR11194	ProteinID:AAR11194.1	EMBL:AM457017
EMBL:AY337614	ProteinID:CAN74478	ProteinID:CAN74478.1	ProteinID:CCB55804	ProteinID:CCB55804.1	InterPro:Carotenoid_Oase
UniProt:F6HLT0	EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EntrezGene:NCED2
wikigene:NCED2	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	TIGR:TC55375	UniParc:UPI000210934F
ArrayExpress:VIT_10s0003g03750	EnsemblPlantsGene:VIT_10s0003g03750	EnsemblPlants:VIT_10s0003g03750.t01	unigene:Vvi.11653	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:6374432..6376728

Molecular Weight (calculated)

67342.7 Da

IEP (calculated)

6.846

GRAVY (calculated)

-0.365

Length

605 amino acids

Sequence
(BLAST)

001: MASSTAPTSN TTVTWAGAHH HKLRSSSSSL LDLGFPSKSI PFRKPNSRRG NAIHCAALQS HSVLHYPRQP FHPKEFSKDD FPENQITQPP QWNFLQRVAA
101: LALDRAESAL VSHERQHPLP KTADPRVQIA GNFAPVPEQP VCHSLPVSGT IPDCINGVYL RNGANPLFEP VAGHHFFDGD GMVHAVTLNG GSASYACRFT
201: ETQRLVQERK LGRPVFPKAI GELHGHSGIA RLLLFYARGL FGLVDHNHGT GVANAGLVYF NQRLLAMSED DLPYQVRIKP SGDLETVGRY DFDKQLRSTM
301: IAHPKVDPVS GELFALSYDV VQKPYLKYFH FSPGGHKSPD VEIPIAGPTM MHDFAITENY VVIPDQQVVF KLQEMITGGS PVIYDKTKKS RFGILAKNAQ
401: TASDIIWVES PDTFCFHLWN AWEEPETNEV VVIGSCMTPA DSIFNECEEN LQSVLSEIRL NLKTGESTRR PIVPASEQVN LEAGMVNRTR LGRKTQYAYL
501: AIAEPWPKVS GFAKVDLSTG DVQKYQYGDQ RYGGEPYFVH KDPTSEREDD GYILAFVHDE KTWKSELHIV NAMNLQLEAT VKLPSRVPYG FHGTFVNSED
601: LANQA

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.