Factsheet for Zm00001d031086_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041319_P001	Maize	plastid	92.97	87.58
Zm00001d000157_P001	Maize	cytosol	15.11	81.9
Zm00001d000095_P001	Maize	cytosol	23.55	81.71
Os12t0617400-01	Rice	cytosol	39.89	80.21
Zm00001d023690_P001	Maize	cytosol	17.93	77.86
Zm00001d008638_P001	Maize	cytosol	11.07	76.83
Zm00001d027690_P001	Maize	cytosol	10.37	76.62
Zm00001d033222_P001	Maize	extracellular	79.26	74.67
Zm00001d013689_P001	Maize	plastid	78.21	74.04
HORVU5Hr1G008050.1	Barley	plastid	78.21	73.31
TraesCS5D01G038800.1	Wheat	plastid	79.09	73.17
TraesCS5B01G029300.1	Wheat	plastid	78.91	73.13
Bra001552.1-P	Field mustard	cytosol	48.86	70.2
CDX82482	Canola	cytosol	48.86	70.2
CDY57471	Canola	cytosol	48.15	69.19
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	61.16	68.77
Bra012603.1-P	Field mustard	cytosol	53.08	68.33
Zm00001d023458_P001	Maize	cytosol	16.34	65.96
CDX98456	Canola	cytosol	29.53	65.88
Zm00001d018819_P001	Maize	plastid	65.91	65.44
Zm00001d007876_P001	Maize	plastid	65.55	64.87
CDY39117	Canola	mitochondrion	62.74	64.56
GSMUA_Achr4P22870_001	Banana	plastid	67.31	63.73
GSMUA_Achr2P12950_001	Banana	plastid	65.91	63.67
GSMUA_Achr5P02570_001	Banana	plastid	66.96	62.46
GSMUA_Achr4P31460_001	Banana	plastid	65.55	61.86
GSMUA_Achr7P01250_001	Banana	plastid	65.38	61.69
GSMUA_Achr6P31180_001	Banana	plastid	64.85	61.19
VIT_19s0093g00550.t01	Wine grape	plastid	64.67	60.43
Bra032359.1-P	Field mustard	plastid	62.04	60.03
CDY33218	Canola	plastid	63.09	60.03
Bra021558.1-P	Field mustard	plastid	63.09	60.03
PGSC0003DMT400039054	Potato	plastid	61.16	60.0
AT1G30100.1	Thale cress	plastid	61.86	59.76
CDY26294	Canola	plastid	61.86	59.76
CDX88443	Canola	plastid	62.92	59.47
Bra027336.1-P	Field mustard	plastid	62.39	59.46
CDY61838	Canola	plastid	61.51	59.42
Solyc08g016720.1.1	Tomato	plastid	60.63	59.38
Bra013298.1-P	Field mustard	plastid	60.63	59.38
Solyc07g056570.1.1	Tomato	plastid	63.09	59.34
VIT_10s0003g03750.t01	Wine grape	plastid	62.92	59.17
Bra008358.1-P	Field mustard	plastid	60.98	59.11
AT3G14440.1	Thale cress	plastid	62.21	59.1
CDX78842	Canola	plastid	60.28	59.04
CDX98455	Canola	plastid	61.86	58.96
CDX97576	Canola	plastid	61.86	58.96
CDY55629	Canola	cytosol, plastid	60.28	58.83
CDY52448	Canola	plastid	62.21	58.8
CDX99475	Canola	plastid	59.93	58.69
CDY01534	Canola	cytosol, plastid	60.11	58.66
Bra035033.1-P	Field mustard	plastid	62.04	58.64
AT4G18350.1	Thale cress	cytosol, plastid	59.4	57.98
AT1G78390.1	Thale cress	cytosol, plastid	62.21	53.88
CDX98457	Canola	plastid	29.53	53.33
Zm00001d042076_P001	Maize	cytosol, plastid	36.2	49.05
Zm00001d035724_P001	Maize	plastid	53.78	48.19
Zm00001d022623_P001	Maize	cytosol	30.05	45.84
Zm00001d034075_P001	Maize	cytosol	2.64	41.67
Zm00001d019813_P001	Maize	plastid	13.53	40.74
KRH45171	Soybean	plastid	10.54	36.36
Zm00001d048373_P002	Maize	cytosol, plasma membrane	34.45	35.64
Zm00001d051556_P001	Maize	plastid	38.49	34.33
Zm00001d017766_P001	Maize	plastid	38.31	34.12
Zm00001d009286_P001	Maize	plastid	14.59	32.94
Zm00001d027592_P001	Maize	mitochondrion	23.2	30.99
Zm00001d033377_P001	Maize	plastid	14.76	29.58
Zm00001d020069_P002	Maize	plastid	24.6	25.04
Zm00001d045232_P001	Maize	plastid	23.73	22.02

Protein Annotations

EnsemblPlants:Zm00001d031086_P001	EnsemblPlants:Zm00001d031086_T001	EnsemblPlantsGene:Zm00001d031086	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	ProteinID:ONM02149.1	SEG:seg
UniParc:UPI0008430A0D	UniProt:A0A1D6KGE1	MapMan:11.1.1.4	:	:	:

Description

nine-cis-epoxycarotenoid dioxygenase2 nine-cis-epoxycarotenoid dioxygenase2

Coordinates

chr1:+:176495793..176506822

Molecular Weight (calculated)

61069.7 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.121

Length

569 amino acids

Sequence
(BLAST)

001: MQALTARTPA SSPCPSSSTV HSRGATRPRS SARFAPPRAA ANSVLSAPRA AARAAAAALD AFESGVIAGL LERPRALPRS ADPAVQIAGN FAPVGEQAPV
101: RSLPVSGRIP PFISGVYARN GANPCFEPSA GHHLFDGDGM VHAVRIRNGA AESYACRFTE TARLRQERAL GRAVFPKAIG ELHGHSGIAR LALFYARGLC
201: GLVDPSRGTG VANAGLVYFN GRLLAMSEDD LPYQVRVTAD GDLRTVGRYD FGGQLAGCGS MIAHPKLDPA SGELFALSYD VIKRPYLRYF YLRPDGGKSG
301: DVEIPLEQPT MVHDFAITER FVVVPDHQVV FKLGEMLRGG SPVVLDAGKT SRFGVLPKYA RDASEMAWVD VPDCFCFHLW NAWEDAGTGE VVVVGSCMTP
401: ADSIFNDADD GRQLQSVLTE IRLDTRTGAS TRRAVLPASA QVNLEVGMVN RNMLGRRTRY AYLAVAEPWP KVSGFAKVDL GTGDVVRFDY GDGRFGGEPC
501: FVPAEGAAPR GEDDGYILSL VRDERKGTSE LLVVNAVDMR LEATVQLPSR VPYGFHGTFI SERELEAQA

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.