Factsheet for Zm00001d051556_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011735_P001
Zm00001d012529_P001
Zm00001d038737_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT4G19170.1	Zm00001d043095_P004	AT5G17790.1	15340011
AT4G19170.1	Zm00001d011735_P001	AT5G56760.1	21798944
AT4G19170.1	Zm00001d038737_P001	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30924	Sorghum	plastid	94.36	94.51
Zm00001d017766_P001	Maize	plastid	93.1	92.96
Os02t0704000-01	Rice	plastid	78.68	78.68
TraesCS6A01G271600.1	Wheat	plastid	77.27	77.15
TraesCS6D01G251800.1	Wheat	plastid	77.12	77.0
HORVU6Hr1G068720.1	Barley	plastid	77.59	76.98
TraesCS6B01G298800.1	Wheat	plastid	77.12	76.52
Bra013378.1-P	Field mustard	peroxisome	51.57	65.28
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	22.1	58.75
AT4G19170.1	Thale cress	plastid	54.55	58.49
PGSC0003DMT400004981	Potato	plastid	53.76	58.04
CDX78923	Canola	plastid	53.92	57.72
CDX99397	Canola	plastid	53.6	57.67
CDX76489	Canola	plastid	47.65	57.14
KRH76475	Soybean	plastid	52.82	57.12
Bra020970.1-P	Field mustard	plastid	50.31	56.61
Solyc08g075490.2.1	Tomato	plastid	52.66	56.57
VIT_02s0087g00910.t01	Wine grape	plastid	52.66	56.09
VIT_02s0087g00930.t01	Wine grape	plastid	50.63	54.84
PGSC0003DMT400047548	Potato	cytosol	32.6	54.74
Solyc08g075480.2.1	Tomato	plastid	49.37	54.59
GSMUA_Achr4P19020_001	Banana	plastid	42.95	52.09
PGSC0003DMT400047553	Potato	plastid	46.87	52.0
Zm00001d034075_P001	Maize	cytosol	2.82	50.0
VIT_16s0039g01370.t01	Wine grape	plastid	43.42	49.64
PGSC0003DMT400004975	Potato	plastid	26.18	48.83
Zm00001d027690_P001	Maize	cytosol	5.64	46.75
Zm00001d008638_P001	Maize	cytosol	5.96	46.34
Zm00001d023690_P001	Maize	cytosol	8.78	42.75
Zm00001d018819_P001	Maize	plastid	36.52	40.66
Zm00001d007876_P001	Maize	plastid	35.58	39.48
Zm00001d031086_P001	Maize	plastid	34.33	38.49
Zm00001d041319_P001	Maize	plastid	35.11	37.09
Zm00001d013689_P001	Maize	plastid	34.33	36.44
Zm00001d033222_P001	Maize	extracellular	34.17	36.09
Zm00001d048373_P002	Maize	cytosol, plasma membrane	30.72	35.64
Zm00001d000095_P001	Maize	cytosol	8.93	34.76
Zm00001d000157_P001	Maize	cytosol	5.33	32.38
Zm00001d042076_P001	Maize	cytosol, plastid	20.85	31.67
Zm00001d023458_P001	Maize	cytosol	6.27	28.37
Zm00001d022623_P001	Maize	cytosol	16.46	28.15
Zm00001d035724_P001	Maize	plastid	25.39	25.51
Zm00001d020069_P002	Maize	plastid	22.26	25.4
Zm00001d019813_P001	Maize	plastid	7.37	24.87
Zm00001d009286_P001	Maize	plastid	8.62	21.83
Zm00001d045232_P001	Maize	plastid	20.85	21.7
Zm00001d027592_P001	Maize	mitochondrion	13.48	20.19
Zm00001d033377_P001	Maize	plastid	8.78	19.72

Protein Annotations

EnsemblPlants:Zm00001d051556_P001	EnsemblPlants:Zm00001d051556_T001	EnsemblPlantsGene:Zm00001d051556	EntrezGene:100501454	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	PFAM:PF03055	ProteinID:AQK54544.1
SEG:seg	UniParc:UPI000221A475	UniProt:K7U7K6	MapMan:9.1.6.3.2	:	:

Description

nine-cis-epoxycarotenoid dioxygenase6 nine-cis-epoxycarotenoid dioxygenase6

Coordinates

chr4:-:162737448..162739364

Molecular Weight (calculated)

68602.7 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.212

Length

638 amino acids

Sequence
(BLAST)

001: MERTLITSNL CLSAHASRSS RRVHYIPPSA SAAAHNSSYR KKSAPSLPPS AAASATVVTA PPSTDNVQST APKQTGRQEL EDLVAAKTST SRTARAPSQA
101: RARARAEPRR RPAPAATSLP MAFCSALEEA INTFVDPPAL RPSVDPRNVL STNFAPVDEL PPTPCPVVRG AIPRCLAGGA YIRNGPNPQH LPRGPHHLFD
201: GDGMLHSLLL PTAGSPPSSD PVLCSRYVQT YKYLVERDAG APVMPNVFSG FHGVAGLARG AVVAARVLTG QMNPAEGVGL ANTSLAFFGG RLYALGESDL
301: PYTVRVDPAT GEVTTHGRCD FGGRLFMGMT AHPKKDPVTG EVFAFRYGPV PPFVTYFRFD PAGNKGPDVP IFSVQQPSFL HDFAVTERYA IFPEIQIVMQ
401: PMGMVTGGAP VGSDSGKVPR LGVLPKYATD ESEMRWFEVP GFNMMHSLNA WEEADGEELV LVAPNVLSVE HALERMELVH SCVEKVRMNL RTGAVSRTPL
501: SAGNLDFGVI HPGYLGRRNR YGYLGIGDPM PKISGVAKLD LDRAGTGDCT VARRDFGPGC FAGEPFFVPD DVEGDGNEDD GYLVCYVHNE RTGENQFVVM
601: DARSPQLDIV AEVQLPARVP YGFHGMFVTQ AELQAQQQ

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.