Factsheet for TraesCS6D01G251800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G353800.1
TraesCS1D01G356800.1
TraesCS3A01G287400.1
TraesCS3A01G339100.1
TraesCS3B01G321600.1
TraesCS3B01G370800.2
TraesCS3D01G286900.1
TraesCS3D01G332700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	TraesCS3A01G339100.1	AT5G17790.1	15340011
AT4G19170.1	TraesCS3B01G370800.2	AT5G17790.1	15340011
AT4G19170.1	TraesCS3D01G332700.1	AT5G17790.1	15340011
AT4G19170.1	TraesCS1A01G353800.1	AT5G56760.1	21798944
AT4G19170.1	TraesCS1D01G356800.1	AT5G56760.1	21798944
AT4G19170.1	TraesCS3A01G287400.1	AT5G56760.1	21798944
AT4G19170.1	TraesCS3B01G321600.1	AT5G56760.1	21798944
AT4G19170.1	TraesCS3D01G286900.1	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G271600.1	Wheat	plastid	98.59	98.59
TraesCS6B01G298800.1	Wheat	plastid	97.65	97.05
HORVU6Hr1G068720.1	Barley	plastid	96.24	95.65
KXG30924	Sorghum	plastid	77.93	78.18
Os02t0704000-01	Rice	plastid	77.93	78.06
Zm00001d051556_P001	Maize	plastid	77.0	77.12
Zm00001d017766_P001	Maize	plastid	77.0	77.0
Bra013378.1-P	Field mustard	peroxisome	52.27	66.27
AT4G19170.1	Thale cress	plastid	54.3	58.32
CDX78923	Canola	plastid	54.3	58.22
PGSC0003DMT400004981	Potato	plastid	53.68	58.04
CDX99397	Canola	plastid	53.83	58.01
VIT_02s0087g00910.t01	Wine grape	plastid	54.15	57.76
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	21.6	57.5
CDX76489	Canola	plastid	47.73	57.33
VIT_02s0087g00930.t01	Wine grape	plastid	52.74	57.22
KRH76475	Soybean	plastid	52.58	56.95
Bra020970.1-P	Field mustard	plastid	50.39	56.79
Solyc08g075490.2.1	Tomato	plastid	52.74	56.73
PGSC0003DMT400047548	Potato	cytosol	32.71	55.0
Solyc08g075480.2.1	Tomato	plastid	49.45	54.77
PGSC0003DMT400047553	Potato	plastid	47.26	52.52
PGSC0003DMT400004975	Potato	plastid	26.92	50.29
VIT_16s0039g01370.t01	Wine grape	plastid	43.82	50.18
GSMUA_Achr4P19020_001	Banana	plastid	40.85	49.62
TraesCS2D01G251600.1	Wheat	plastid	35.05	38.49
TraesCS5D01G383500.1	Wheat	plastid	35.52	38.15
TraesCS2D01G013000.1	Wheat	cytosol	34.27	36.32
TraesCS5D01G038800.1	Wheat	plastid	33.96	35.28
TraesCS5D01G001900.1	Wheat	cytosol, golgi	29.89	34.79
TraesCS5D01G002800.1	Wheat	cytosol	29.11	33.76
TraesCS5D01G002900.1	Wheat	plastid	28.8	29.97
TraesCS5D01G186900.1	Wheat	cytosol	23.79	23.49

Protein Annotations

EnsemblPlants:TraesCS6D01G251800.1	EnsemblPlantsGene:TraesCS6D01G251800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0010287	GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46
PFAM:PF03055	SEG:seg	MapMan:9.1.6.3.2	:	:	:

Description

No Description!

Coordinates

chr6D:-:355857551..355859470

Molecular Weight (calculated)

68795.9 Da

IEP (calculated)

6.236

GRAVY (calculated)

-0.201

Length

639 amino acids

Sequence
(BLAST)

001: MEGALVTSNF SMSDLYPAKA NAAHAPRSRR LSYISPAASS AAAPNPSYRR RKGTSPPPPS AAATATVLTS PPKPVEQQET EEHLVDTSTN NVSATRVTTA
101: RTSRPSDAPR SSRPRRRPTA SLQAAFCNAL EEAINTFVDP PVLRPSVDPR HVLSANFAPV DELPPTPCPV VRGVIPRCLA GGAYIRNGPN PQHLPRGPHH
201: LFDGDGMLHS LLLPTAPDSD PVLCSRYVQT YKYIVERNAG EPVLPNVFSG FHGLAGMARG AVTAARVLTG QMNPMEGVGL ANTSLAVFGG RLYALGESDL
301: PYAVRVDPAT GEVTTLGRCD FGGRLSMGMT AHPKKDPITG ELFAFRYGPM PPFVTYFRFD PAGNKGADVP IFSVKQPSFL HDFAVTEHYA IFPEIQIVMN
401: PMGMVVGGGS PVGADPGMVP RLGVIPKYAA DESEMRWFEV PGFNMMHSVN AWEEAGGEEI VMVAPNILSI EHTLERMELI HASVELVRIN LRTGNVTRTP
501: LAAANLDFGV INPGCLGRRN RYGYFGVGDP MPKIGGVAKL DFDRAGHGDC TVARRDFGPG CFAGEPFFVP DDVEGNGDED DGYVVCYVHD EGTGDNRFVV
601: MDAQAPELDI VAEVQLPSRV PYGFHGLFVT QAELRSQHQ

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.