Factsheet for PGSC0003DMT400004978

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 3
golgi 1
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000764
PGSC0003DMT400028376

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	PGSC0003DMT400028376	AT5G17790.1	15340011
AT4G19170.1	PGSC0003DMT400000764	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047548	Potato	cytosol	64.17	40.53
Solyc08g075480.2.1	Tomato	plastid	94.17	39.17
PGSC0003DMT400004981	Potato	plastid	82.08	33.33
Bra013378.1-P	Field mustard	peroxisome	66.25	31.55
Bra020970.1-P	Field mustard	plastid	64.58	27.34
PGSC0003DMT400047553	Potato	plastid	65.0	27.13
AT4G19170.1	Thale cress	plastid	66.67	26.89
CDX99397	Canola	plastid	66.25	26.81
VIT_02s0087g00910.t01	Wine grape	plastid	66.67	26.71
CDX78923	Canola	plastid	65.83	26.51
CDX76489	Canola	plastid	56.25	25.38
KRH76475	Soybean	plastid	62.08	25.25
Os12t0435200-01	Rice	plastid	53.75	22.4
KXG30924	Sorghum	plastid	58.75	22.14
Zm00001d051556_P001	Maize	plastid	58.75	22.1
TraesCS6B01G298800.1	Wheat	plastid	58.33	21.77
HORVU6Hr1G068720.1	Barley	plastid	58.33	21.77
TraesCS6A01G271600.1	Wheat	plastid	57.92	21.75
TraesCS6D01G251800.1	Wheat	plastid	57.5	21.6
Zm00001d017766_P001	Maize	plastid	57.5	21.6
Os02t0704000-01	Rice	plastid	56.67	21.32
GSMUA_Achr4P19020_001	Banana	plastid	40.42	18.44
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	35.0	16.6
PGSC0003DMT400049305	Potato	cytosol	34.58	16.31
PGSC0003DMT400039054	Potato	plastid	33.33	13.79
PGSC0003DMT400011015	Potato	plastid	26.25	10.28
PGSC0003DMT400011006	Potato	cytosol	25.83	10.21
PGSC0003DMT400004975	Potato	plastid	2.92	2.05

Protein Annotations

EnsemblPlants:PGSC0003DMT400004978	EnsemblPlantsGene:PGSC0003DMG401001968	EntrezGene:102585426	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	PFAM:PF03055	PGSC:PGSC0003DMG401001968	SEG:seg	UniParc:UPI000296A18B
UniProt:M0ZPA1	MapMan:35.1	:	:	:	:

Description

Carotenoid cleavage dioxygenase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG401001968]

Coordinates

chr8:-:47360292..47362256

Molecular Weight (calculated)

26864.4 Da

IEP (calculated)

6.160

GRAVY (calculated)

-0.137

Length

240 amino acids

Sequence
(BLAST)

001: MNPIKFILTG GSLVGMNSRK ISRLGVIPHY AKDESEMRWF DVPGFNNLHA INAWEEDGGD TIVLVAPNIL SVEHTLERMD MIHGCVEKVK INLNSGVVSR
101: HPISTRNLDF GVINPTYVGK KNKYVYATIG YPPPKLSGIV KLDVSIAEVD RRDCIVACRI FGEGCFCGEP FFMAKNNLED EEDDGYVMLY VHNEKTGESN
201: FLVMDATSPN LDIVANVKLP RRVPYGFHGI FVRESDLNKL

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.